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Description
DSRC crashes when trying to compress a file containing a single read. For example:
@1
TAACGAAACCGGCATGGAACCTCCTGTTNTTGTGGCGGGGGGGGGTAGGCTAGAGAGCTGGCGCCCGCAACCCGGGGGGGGACTTTNNNGGGGGGGGCGG
+
IIHHIIIIIIIIIHIDEGHIIIIIIFEE#CEEA###################################################################
The read looks ordinary to me. I also tried other reads with the same effect.
Full steps to reproduce:
cd /tmp
mkdir dsrc-repro-2
cd dsrc-repro-2
git clone https://github.com/refresh-bio/DSRC
cd DSRC
make -f Makefile.c++11 bin
cd ..
wget http://kirill.med.u-tokai.ac.jp/data/temp/dsrc-repro-2.fastq
./DSRC/bin/dsrc c -d0 -q0 -b8 -t1 dsrc-repro-2.fastq dsrc-repro-2.dsrc
Test machine: Ubuntu 18.04.1 LTS, dual Xeon E5-2643v3.
DSRC crashes with this output:
terminate called after throwing an instance of 'dsrc::DsrcException'
what(): Error analyzing FASTQ dataset
Aborted (core dumped)
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