diff --git a/README.md b/README.md index 0becb4b23..e49508368 100644 --- a/README.md +++ b/README.md @@ -44,12 +44,6 @@ The Platform documentation is versioned and lives in the `platform-enterprise_ve We have a script which can select a commit (or ideally release tag) to be used for publishing a new version on the docs website. -### Wave - -Wave documentation is available as a Git submodule. Wave documentation is not versioned, and lives in the `wave_docs` directory. Changes to the Wave documentation must be made in the [Wave repo](https://github.com/seqeralabs/wave/tree/master/docs). To enable access to the Wave docs in the submodule, after cloning this repository you must run `git submodule update --init --recursive`. - -To incorporate documentation changes from the Wave repository, run the following command: `git submodule update --recursive --remote`. This is mandatory, or published documentation cannot reflect any changes made to the Wave documentation since this command was last run. If you accidentally run the aforementioned command and want to revert, run the following command to revert to the previous commit ID for the Wave repository: `git submodule update --init`. - ## Write and edit content ### Install pre-commit @@ -179,5 +173,3 @@ They're the same except that they have different environment variable set in the This means that whenever you push to `master`, both deploy and both sites update. The site's `netlify.toml` includes some redirects with `200` statuses that take links to missing content on the primary deployment to fetch data from the secondary deployment, without affecting the browser bar URL. - -That should be it! diff --git a/docusaurus.config.js b/docusaurus.config.js index a6c138d49..0032d3072 100644 --- a/docusaurus.config.js +++ b/docusaurus.config.js @@ -1,7 +1,11 @@ -import { themes } from "prism-react-renderer"; const path = require("path"); import "dotenv/config"; import platform_enterprise_latest_version from "./platform-enterprise_latest_version.js"; +import { + createSeqeraConfig, + getSeqeraThemeConfig, + getSeqeraPresetOptions +} from "@seqera/docusaurus-preset-seqera"; export default async function createConfigAsync() { @@ -39,7 +43,7 @@ export default async function createConfigAsync() { (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], editUrl: "https://github.com/seqeralabs/docs/tree/master/", sidebarPath: "platform-enterprise_docs/enterprise-sidebar.json", }, @@ -69,29 +73,12 @@ export default async function createConfigAsync() { (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], sidebarPath: "platform-cli-docs/docs/sidebar/sidebar.js", editUrl: "https://github.com/seqeralabs/docs/tree/master/", }, ]; - const docs_platform_openapi = [ - "docusaurus-plugin-openapi-docs", - { - id: "api", // plugin id - docsPluginId: "classic", // configured for preset-classic - config: { - platform: { - specPath: "platform-api-docs/scripts/specs/seqera-api-latest-decorated.yml", - outputDir: "platform-api-docs/docs", - sidebarOptions: { - groupPathsBy: "tag", - }, - }, - }, - }, - ]; - const docs_platform_cloud = [ "@docusaurus/plugin-content-docs", { @@ -104,7 +91,7 @@ export default async function createConfigAsync() { (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], editUrl: "https://github.com/seqeralabs/docs/tree/master/", sidebarPath: "./platform-cloud/cloud-sidebar.json", }, @@ -122,7 +109,7 @@ export default async function createConfigAsync() { (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], editUrl: ({ docPath }) => { return `https://github.com/MultiQC/MultiQC/blob/main/docs/markdown/${docPath.replace("multiqc_docs/multiqc_repo/docs", "")}`; }, @@ -141,7 +128,7 @@ export default async function createConfigAsync() { (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], editUrl: "https://github.com/seqeralabs/docs/tree/master/", sidebarPath: "./fusion_docs/sidebar.json", }, @@ -158,9 +145,9 @@ export default async function createConfigAsync() { (await require("remark-math")).default, (await import("docusaurus-remark-plugin-tab-blocks")).default, (await require("remark-yaml-to-table")).default, - (await require("remark-deflist")).default, + (await import("remark-deflist")).default, ], - rehypePlugins: [(await require("rehype-katex")).default], + rehypePlugins: [require("rehype-katex")], editUrl: ({ docPath }) => { return `https://github.com/seqeralabs/wave/blob/master/docs/${docPath.replace("wave_docs/wave_repo/docs", "")}`; }, @@ -186,18 +173,10 @@ export default async function createConfigAsync() { "\n INCLUDE_NEXT: " + (process.env.INCLUDE_NEXT ? true : false), ); - return { + return createSeqeraConfig({ title: "Seqera Docs", tagline: "Documentation for Seqera products", - favicon: "img/favicon--dynamic.svg", - - // Set the production url of your site here url: "https://docs.seqera.io", - // Set the // pathname under which your site is served - // For GitHub pages deployment, it is often '//' - baseUrl: "/", - trailingSlash: false, - /* * Enable faster Docusaurus optimizations (experimental v4 features) * Reference: https://github.com/facebook/docusaurus/issues/10556 @@ -222,7 +201,6 @@ export default async function createConfigAsync() { }, }, - // GitHub pages deployment config. // If you aren't using GitHub pages, you don't need these. organizationName: "seqeralabs", // Usually your GitHub org/user name. projectName: "docs", // Usually your repo name. @@ -243,38 +221,30 @@ export default async function createConfigAsync() { // Put your custom environment here }, - // Even if you don't use internalization, you can use this field to set useful - // metadata like html lang. For example, if your site is Chinese, you may want - // to replace "en" with "zh-Hans". - i18n: { - defaultLocale: "en", - locales: ["en"], - }, - themes: [ - "docusaurus-theme-openapi-docs", - "docusaurus-theme-search-typesense", - ], presets: [ [ - "classic", - { + "@seqera/docusaurus-preset-seqera", + await getSeqeraPresetOptions({ blog: process.env.EXCLUDE_CHANGELOG ? false : changelog, docs: false, theme: { - customCss: [ - require.resolve("./src/css/main.css"), - require.resolve("./src/css/typography.css"), - require.resolve("./src/css/def-list.css"), - require.resolve("./src/css/misc.css"), - require.resolve("./src/css/def-list.css"), - require.resolve("./src/css/components/checklist.css"), - require.resolve("./src/css/components/box.css"), - require.resolve("./src/css/theme-colors.css"), - require.resolve("./src/css/api.css"), - require.resolve("./src/css/fonts/inter.css"), - require.resolve("./src/css/fonts/degular.css"), - ], + customCss: require.resolve("./src/custom.css"), }, + openapi: process.env.EXCLUDE_PLATFORM_OPENAPI + ? false + : { + id: "api", + docsPluginId: "platform-api", + config: { + platform: { + specPath: "platform-api-docs/scripts/specs/seqera-api-latest-decorated.yml", + outputDir: "platform-api-docs/docs", + sidebarOptions: { + groupPathsBy: "tag", + }, + }, + }, + }, gtag: { trackingID: "G-NR1CNM213G", anonymizeIP: true, @@ -282,7 +252,7 @@ export default async function createConfigAsync() { googleTagManager: { containerId: "GTM-MBCJKK4", }, - }, + }), ], ], plugins: [ @@ -290,7 +260,6 @@ export default async function createConfigAsync() { process.env.EXCLUDE_PLATFORM_CLOUD ? null : docs_platform_cloud, process.env.EXCLUDE_PLATFORM_API ? null : docs_platform_api, process.env.EXCLUDE_PLATFORM_CLI ? null : docs_platform_cli, - process.env.EXCLUDE_PLATFORM_OPENAPI ? null : docs_platform_openapi, process.env.EXCLUDE_MULTIQC ? null : docs_multiqc, process.env.EXCLUDE_FUSION ? null : docs_fusion, process.env.EXCLUDE_WAVE ? null : docs_wave, @@ -309,232 +278,8 @@ export default async function createConfigAsync() { }, }; }, - - async function tailwind() { - return { - name: "docusaurus-tailwindcss", - configurePostCss(postcssOptions) { - postcssOptions.plugins = [require("@tailwindcss/postcss")]; - return postcssOptions; - }, - }; - }, ], - themeConfig: { - image: "img/share.jpg", - - // Typesense search configuration - typesense: { - typesenseCollectionName: 'seqera_docs', - searchPagePath: '/search', - - typesenseServerConfig: { - nodes: [{ - host: '9scwdgbn4v8r1lyfp.a1.typesense.net', - port: 443, - protocol: 'https', - }], - apiKey: 'UUIEzlGORRp9lV5GndPR1zYBVBCPIJOl', - connectionTimeoutSeconds: 2, - }, - - typesenseSearchParameters: { - query_by: 'content,hierarchy.lvl0,hierarchy.lvl1,hierarchy.lvl2,hierarchy.lvl3', - }, - - contextualSearch: true, - placeholder: 'Search Seqera docs...', - }, - - navbar: { - logo: { - alt: "Seqera", - src: "img/Logo.svg", - srcDark: "img/LogoWhite.svg", - width: "180px", - height: "40px", - style: { - width: "180px", - height: "40px" - } - }, - items: [ - { - to: "/platform-cloud", - position: "left", - label: "Platform Cloud", - }, - { - to: "/platform-enterprise", - position: "left", - label: "Platform Enterprise", - }, - { - type: "docsVersionDropdown", - position: "right", - docsPluginId: "platform-enterprise", - }, - { - to: "https://www.nextflow.io/docs/latest/", - html: 'Nextflow ', - position: "left", - target: "_blank", - }, - { - to: "/multiqc", - label: "MultiQC", - position: "left", - }, - { - to: "/wave", - label: "Wave", - position: "left", - }, - { - to: "/fusion", - label: "Fusion", - position: "left", - }, - { - to: "https://training.nextflow.io/latest/", - html: 'Nextflow Training ', - position: "left", - target: "_blank", - }, - { - to: "/platform-api", - label: "Platform API", - position: "left", - }, - { - to: "/platform-cli", - label: "Platform CLI", - position: "left", - }, - ], - }, - footer: { - style: "dark", - logo: { - alt: "Seqera Docs logo", - src: "img/icon.svg", - srcDark: "img/iconLight.svg", - href: "https://docs.seqera.io", - width: 25, - height: 25, - }, - links: [ - { - title: "Docs", - items: [ - { - label: "Platform Enterprise", - to: "/platform-enterprise", - }, - { - label: "Platform Cloud", - to: "/platform-cloud", - }, - ], - }, - { - title: "Community", - items: [ - { - label: "Github", - href: "https://github.com/seqeralabs", - }, - { - label: "LinkedIn", - href: "https://www.linkedin.com/company/14065390/", - }, - { - label: "Twitter", - href: "https://twitter.com/seqeralabs", - }, - ], - }, - { - title: "More", - items: [ - { - label: "About Seqera", - href: "https://seqera.io/", - }, - ], - }, - ], - copyright: `© ${new Date().getFullYear()} Seqera`, - }, - languageTabs: [ - { - highlight: "python", - language: "python", - logoClass: "python", - }, - { - highlight: "bash", - language: "curl", - logoClass: "curl", - }, - { - highlight: "java", - language: "java", - logoClass: "java", - variant: "unirest", - }, - { - highlight: "r", - language: "r", - logoClass: "r", - }, - { - highlight: "javascript", - language: "javascript", - logoClass: "javascript", - }, - { - highlight: "go", - language: "go", - logoClass: "go", - }, - { - highlight: "powershell", - language: "powershell", - logoClass: "powershell", - }, - ], - prism: { - theme: themes.oneLight, - darkTheme: themes.oneDark, - additionalLanguages: [ - "bash", - "docker", - "groovy", - "ini", - "java", - "javascript", - "json", - "nginx", - "python", - "r", - "shell-session", - "sql", - "typescript", - "yaml", - ], - }, - }, - clientModules: [require.resolve("./clientside-scripts.js")], - stylesheets: [ - { - href: "https://cdn.jsdelivr.net/npm/katex@0.12.0/dist/katex.min.css", - type: "text/css", - integrity: - "sha384-AfEj0r4/OFrOo5t7NnNe46zW/tFgW6x/bCJG8FqQCEo3+Aro6EYUG4+cU+KJWu/X", - crossorigin: "anonymous", - }, - ], - }; + themeConfig: getSeqeraThemeConfig({}), + }); } diff --git a/mdx-md-convert.sh b/mdx-md-convert.sh deleted file mode 100755 index 4cf8d9458..000000000 --- a/mdx-md-convert.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash - -# Check if a folder path was provided -if [ -z "$1" ]; then - echo "Usage: ./convert.sh " - exit 1 -fi - -# Navigate to the specified folder -folder_path="$1" - -if [ ! -d "$folder_path" ]; then - echo "Error: Folder '$folder_path' does not exist." - exit 1 -fi - -# Find all .mdx files recursively -find "$folder_path" -type f -name "*.mdx" | while read -r file; do - if grep -qE '^\s*import .* from .+;$' "$file"; then - echo "Skipped (contains 'import ... from ...;'): $file" - continue - fi - - # Construct new filename with .md extension - new_file="${file%.mdx}.md" - mv "$file" "$new_file" - echo "Converted: $file -> $new_file" -done - -echo "All .mdx files without imports have been converted to .md." \ No newline at end of file diff --git a/netlify.toml b/netlify.toml index d71841d05..395b91384 100644 --- a/netlify.toml +++ b/netlify.toml @@ -31,7 +31,6 @@ to = "https://seqera-docs-api.netlify.app/assets/:splat" status = 200 - [[plugins]] package = "netlify-plugin-cache" [plugins.inputs] diff --git a/package-lock.json b/package-lock.json index f180c9bc9..b986b9f6b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -8,44 +8,27 @@ "name": "seqera-docs", "version": "0.0.0", "dependencies": { - "@docusaurus/core": "^3.9.2", "@docusaurus/faster": "^3.9.2", - "@docusaurus/mdx-loader": "^3.9.2", - "@docusaurus/plugin-google-gtag": "^3.9.2", - "@docusaurus/plugin-google-tag-manager": "^3.9.2", - "@docusaurus/preset-classic": "^3.9.2", - "@mdx-js/react": "^3.0.0", "@rspack/core": "^1.4.11", - "@tailwindcss/postcss": "^4.1.12", - "clsx": "^1.2.1", - "docusaurus-plugin-openapi-docs": "^4.7.1", - "docusaurus-remark-plugin-tab-blocks": "^3.1.0", - "docusaurus-theme-openapi-docs": "^4.7.1", - "docusaurus-theme-search-typesense": "^0.25.0", + "@seqera/docusaurus-preset-seqera": "^1.0.4", + "daisyui": "^5.5.14", "framer-motion": "^11.0.0", "image-size": "^2.0.2", "mdi-react": "^9.4.0", "postcss-import": "^16.1.1", "postcss-loader": "^8.1.1", "postcss-nesting": "^14.0.0", - "prism-react-renderer": "^2.4.1", - "raw-loader": "^4.0.2", "react": "^18.2.0", "react-cookie": "^7.2.2", "react-dom": "^18.2.0", - "rehype-katex": "^7.0.1", - "remark-code-import": "^1.2.0", + "rehype-katex": "5.0.0", "remark-deflist": "^1.0.0", - "remark-math": "^6.0.0", - "remark-yaml-to-table": "github:seqeralabs/remark-yaml-to-table", "webpack-dev-server": "^5.2.1", "yaml": "^2.8.1" }, "devDependencies": { "@docusaurus/eslint-plugin": "^3.9.2", - "@docusaurus/module-type-aliases": "^3.9.2", "@tsconfig/docusaurus": "^2.0.3", - "autoprefixer": "^10.4.16", "dotenv": "^17.2.3", "eslint": "^8.56.0", "eslint-plugin-import": "^2.29.1", @@ -55,10 +38,8 @@ "gray-matter": "^4.0.3", "markdownlint-cli2": "^0.20.0", "netlify-plugin-cache": "^1.0.3", - "postcss": "^8.4.32", "prettier": "^3.6.2", "simple-git": "^3.19.1", - "tailwindcss": "^4.1.12", "typescript": "^5.8.3" }, "engines": { @@ -67,8 +48,6 @@ }, "node_modules/@algolia/abtesting": { "version": "1.13.0", - "resolved": "https://registry.npmjs.org/@algolia/abtesting/-/abtesting-1.13.0.tgz", - "integrity": "sha512-Zrqam12iorp3FjiKMXSTpedGYznZ3hTEOAr2oCxI8tbF8bS1kQHClyDYNq/eV0ewMNLyFkgZVWjaS+8spsOYiQ==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -82,8 +61,6 @@ }, "node_modules/@algolia/autocomplete-core": { "version": "1.8.2", - "resolved": "https://registry.npmjs.org/@algolia/autocomplete-core/-/autocomplete-core-1.8.2.tgz", - "integrity": "sha512-mTeshsyFhAqw/ebqNsQpMtbnjr+qVOSKXArEj4K0d7sqc8It1XD0gkASwecm9mF/jlOQ4Z9RNg1HbdA8JPdRwQ==", "license": "MIT", "dependencies": { "@algolia/autocomplete-shared": "1.8.2" @@ -91,8 +68,6 @@ }, "node_modules/@algolia/autocomplete-preset-algolia": { "version": "1.8.2", - "resolved": "https://registry.npmjs.org/@algolia/autocomplete-preset-algolia/-/autocomplete-preset-algolia-1.8.2.tgz", - "integrity": "sha512-J0oTx4me6ZM9kIKPuL3lyU3aB8DEvpVvR6xWmHVROx5rOYJGQcZsdG4ozxwcOyiiu3qxMkIbzntnV1S1VWD8yA==", "license": "MIT", "dependencies": { "@algolia/autocomplete-shared": "1.8.2" @@ -104,14 +79,10 @@ }, "node_modules/@algolia/autocomplete-shared": { "version": "1.8.2", - "resolved": "https://registry.npmjs.org/@algolia/autocomplete-shared/-/autocomplete-shared-1.8.2.tgz", - "integrity": "sha512-b6Z/X4MczChMcfhk6kfRmBzPgjoPzuS9KGR4AFsiLulLNRAAqhP+xZTKtMnZGhLuc61I20d5WqlId02AZvcO6g==", "license": "MIT" }, "node_modules/@algolia/client-abtesting": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-abtesting/-/client-abtesting-5.47.0.tgz", - "integrity": "sha512-aOpsdlgS9xTEvz47+nXmw8m0NtUiQbvGWNuSEb7fA46iPL5FxOmOUZkh8PREBJpZ0/H8fclSc7BMJCVr+Dn72w==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -125,8 +96,6 @@ }, "node_modules/@algolia/client-analytics": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-analytics/-/client-analytics-5.47.0.tgz", - "integrity": "sha512-EcF4w7IvIk1sowrO7Pdy4Ako7x/S8+nuCgdk6En+u5jsaNQM4rTT09zjBPA+WQphXkA2mLrsMwge96rf6i7Mow==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -140,8 +109,6 @@ }, "node_modules/@algolia/client-common": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-common/-/client-common-5.47.0.tgz", - "integrity": "sha512-Wzg5Me2FqgRDj0lFuPWFK05UOWccSMsIBL2YqmTmaOzxVlLZ+oUqvKbsUSOE5ud8Fo1JU7JyiLmEXBtgDKzTwg==", "license": "MIT", "engines": { "node": ">= 14.0.0" @@ -149,8 +116,6 @@ }, "node_modules/@algolia/client-insights": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-insights/-/client-insights-5.47.0.tgz", - "integrity": "sha512-Ci+cn/FDIsDxSKMRBEiyKrqybblbk8xugo6ujDN1GSTv9RIZxwxqZYuHfdLnLEwLlX7GB8pqVyqrUSlRnR+sJA==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -164,8 +129,6 @@ }, "node_modules/@algolia/client-personalization": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-personalization/-/client-personalization-5.47.0.tgz", - "integrity": "sha512-gsLnHPZmWcX0T3IigkDL2imCNtsQ7dR5xfnwiFsb+uTHCuYQt+IwSNjsd8tok6HLGLzZrliSaXtB5mfGBtYZvQ==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -179,8 +142,6 @@ }, "node_modules/@algolia/client-query-suggestions": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-query-suggestions/-/client-query-suggestions-5.47.0.tgz", - "integrity": "sha512-PDOw0s8WSlR2fWFjPQldEpmm/gAoUgLigvC3k/jCSi/DzigdGX6RdC0Gh1RR1P8Cbk5KOWYDuL3TNzdYwkfDyA==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -194,8 +155,6 @@ }, "node_modules/@algolia/client-search": { "version": "5.47.0", - "resolved": "https://registry.npmjs.org/@algolia/client-search/-/client-search-5.47.0.tgz", - "integrity": "sha512-b5hlU69CuhnS2Rqgsz7uSW0t4VqrLMLTPbUpEl0QVz56rsSwr1Sugyogrjb493sWDA+XU1FU5m9eB8uH7MoI0g==", "license": "MIT", "dependencies": { "@algolia/client-common": "5.47.0", @@ -209,14 +168,10 @@ }, "node_modules/@algolia/events": { "version": "4.0.1", - 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"resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz", - "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==", "license": "MIT", "dependencies": { "ansi-styles": "^4.0.0", @@ -26990,14 +23332,10 @@ }, "node_modules/wrap-ansi-cjs/node_modules/emoji-regex": { "version": "8.0.0", - "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz", - "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==", "license": "MIT" }, "node_modules/wrap-ansi-cjs/node_modules/string-width": { "version": "4.2.3", - "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz", - "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==", "license": "MIT", "dependencies": { "emoji-regex": "^8.0.0", @@ -27010,8 +23348,6 @@ }, "node_modules/wrap-ansi/node_modules/ansi-regex": { "version": "6.2.2", - 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"resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz", - "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==", "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", @@ -27061,8 +23391,6 @@ }, "node_modules/ws": { "version": "7.5.10", - "resolved": "https://registry.npmjs.org/ws/-/ws-7.5.10.tgz", - "integrity": "sha512-+dbF1tHwZpXcbOJdVOkzLDxZP1ailvSxM6ZweXTegylPny803bFhA+vqBYw4s31NSAk4S2Qz+AKXK9a4wkdjcQ==", "license": "MIT", "engines": { "node": ">=8.3.0" @@ -27082,8 +23410,6 @@ }, "node_modules/wsl-utils": { "version": "0.1.0", - "resolved": "https://registry.npmjs.org/wsl-utils/-/wsl-utils-0.1.0.tgz", - "integrity": "sha512-h3Fbisa2nKGPxCpm89Hk33lBLsnaGBvctQopaBSOW/uIs6FTe1ATyAnKFJrzVs9vpGdsTe73WF3V4lIsk4Gacw==", "license": "MIT", "dependencies": { "is-wsl": "^3.1.0" @@ -27097,8 +23423,6 @@ }, "node_modules/wsl-utils/node_modules/is-wsl": { "version": "3.1.0", - "resolved": "https://registry.npmjs.org/is-wsl/-/is-wsl-3.1.0.tgz", - "integrity": "sha512-UcVfVfaK4Sc4m7X3dUSoHoozQGBEFeDC+zVo06t98xe8CzHSZZBekNXH+tu0NalHolcJ/QAGqS46Hef7QXBIMw==", "license": "MIT", "dependencies": { "is-inside-container": "^1.0.0" @@ -27112,8 +23436,6 @@ }, "node_modules/xdg-basedir": { "version": "5.1.0", - "resolved": "https://registry.npmjs.org/xdg-basedir/-/xdg-basedir-5.1.0.tgz", - "integrity": "sha512-GCPAHLvrIH13+c0SuacwvRYj2SxJXQ4kaVTT5xgL3kPrz56XxkF21IGhjSE1+W0aw7gpBWRGXLCPnPby6lSpmQ==", "license": "MIT", "engines": { "node": ">=12" @@ -27124,8 +23446,6 @@ }, "node_modules/xml-formatter": { "version": "3.6.7", - "resolved": "https://registry.npmjs.org/xml-formatter/-/xml-formatter-3.6.7.tgz", - "integrity": "sha512-IsfFYJQuoDqtUlKhm4EzeoBOb+fQwzQVeyxxAQ0sThn/nFnQmyLPTplqq4yRhaOENH/tAyujD2TBfIYzUKB6hg==", "license": "MIT", "dependencies": { "xml-parser-xo": "^4.1.5" @@ -27136,8 +23456,6 @@ }, "node_modules/xml-js": { "version": "1.6.11", - "resolved": "https://registry.npmjs.org/xml-js/-/xml-js-1.6.11.tgz", - "integrity": "sha512-7rVi2KMfwfWFl+GpPg6m80IVMWXLRjO+PxTq7V2CDhoGak0wzYzFgUY2m4XJ47OGdXd8eLE8EmwfAmdjw7lC1g==", "license": "MIT", "dependencies": { "sax": "^1.2.4" @@ -27148,17 +23466,20 @@ }, "node_modules/xml-parser-xo": { "version": "4.1.5", - "resolved": "https://registry.npmjs.org/xml-parser-xo/-/xml-parser-xo-4.1.5.tgz", - "integrity": "sha512-TxyRxk9sTOUg3glxSIY6f0nfuqRll2OEF8TspLgh5mZkLuBgheCn3zClcDSGJ58TvNmiwyCCuat4UajPud/5Og==", "license": "MIT", "engines": { "node": ">= 16" } }, + "node_modules/xtend": { + "version": "4.0.2", + "license": "MIT", + "engines": { + "node": ">=0.4" + } + }, "node_modules/y18n": { "version": "5.0.8", - "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz", - "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==", "license": "ISC", "engines": { "node": ">=10" @@ -27166,14 +23487,10 @@ }, "node_modules/yallist": { "version": "3.1.1", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", - "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", "license": "ISC" }, "node_modules/yaml": { "version": "2.8.2", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.8.2.tgz", - "integrity": "sha512-mplynKqc1C2hTVYxd0PU2xQAc22TI1vShAYGksCCfxbn/dFwnHTNi1bvYsBTkhdUNtGIf5xNOg938rrSSYvS9A==", "license": "ISC", "bin": { "yaml": "bin.mjs" @@ -27187,14 +23504,10 @@ }, "node_modules/yaml-ast-parser": { "version": "0.0.43", - "resolved": "https://registry.npmjs.org/yaml-ast-parser/-/yaml-ast-parser-0.0.43.tgz", - "integrity": "sha512-2PTINUwsRqSd+s8XxKaJWQlUuEMHJQyEuh2edBbW8KNJz0SJPwUSD2zRWqezFEdN7IzAgeuYHFUCF7o8zRdZ0A==", "license": "Apache-2.0" }, "node_modules/yargs": { "version": "17.7.2", - "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz", - "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==", "license": "MIT", "dependencies": { "cliui": "^8.0.1", @@ -27211,8 +23524,6 @@ }, "node_modules/yargs-parser": { "version": "21.1.1", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz", - "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==", "license": "ISC", "engines": { "node": ">=12" @@ -27220,14 +23531,10 @@ }, "node_modules/yargs/node_modules/emoji-regex": { "version": "8.0.0", - "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz", - "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==", "license": "MIT" }, "node_modules/yargs/node_modules/string-width": { "version": "4.2.3", - "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz", - "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==", "license": "MIT", "dependencies": { "emoji-regex": "^8.0.0", @@ -27240,8 +23547,6 @@ }, "node_modules/yocto-queue": { "version": "0.1.0", - "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", - "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", "dev": true, "license": "MIT", "engines": { @@ -27253,8 +23558,6 @@ }, "node_modules/zwitch": { "version": "2.0.4", - "resolved": "https://registry.npmjs.org/zwitch/-/zwitch-2.0.4.tgz", - "integrity": "sha512-bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A==", "license": "MIT", "funding": { "type": "github", diff --git a/package.json b/package.json index ceb3ee3cd..9e3f22daf 100644 --- a/package.json +++ b/package.json @@ -4,6 +4,7 @@ "private": true, "overrides": { "glob": "^11.1.0", + "rehype-katex": "5.0.0", "gray-matter": { "js-yaml": "3.14.2" }, @@ -21,7 +22,7 @@ "start": "docusaurus start", "dev": "npm run start", "prebuild": "npm run fetch-docs-oss", - "build": "docusaurus build", + "build": "docusaurus build --no-minify", "swizzle": "docusaurus swizzle", "deploy": "docusaurus deploy", "clear": "docusaurus clear", @@ -35,44 +36,27 @@ "markdownlint": "markdownlint-cli2 'platform-enterprise_versioned_docs/**/*.mdx' 'platform-cloud/docs/*.mdx' 'wave_docs/**/*.mdx' 'fusion_docs/**/*.mdx' --config .markdownlint-cli2.cjs" }, "dependencies": { - "@docusaurus/core": "^3.9.2", "@docusaurus/faster": "^3.9.2", - "@docusaurus/mdx-loader": "^3.9.2", - "@docusaurus/plugin-google-gtag": "^3.9.2", - "@docusaurus/plugin-google-tag-manager": "^3.9.2", - "@docusaurus/preset-classic": "^3.9.2", - "@mdx-js/react": "^3.0.0", "@rspack/core": "^1.4.11", - "@tailwindcss/postcss": "^4.1.12", - "clsx": "^1.2.1", - "docusaurus-plugin-openapi-docs": "^4.7.1", - "docusaurus-remark-plugin-tab-blocks": "^3.1.0", - "docusaurus-theme-openapi-docs": "^4.7.1", - "docusaurus-theme-search-typesense": "^0.25.0", + "@seqera/docusaurus-preset-seqera": "^1.0.4", + "daisyui": "^5.5.14", "framer-motion": "^11.0.0", "image-size": "^2.0.2", "mdi-react": "^9.4.0", "postcss-import": "^16.1.1", "postcss-loader": "^8.1.1", "postcss-nesting": "^14.0.0", - "prism-react-renderer": "^2.4.1", - "raw-loader": "^4.0.2", "react": "^18.2.0", "react-cookie": "^7.2.2", "react-dom": "^18.2.0", - "rehype-katex": "^7.0.1", - "remark-code-import": "^1.2.0", + "rehype-katex": "5.0.0", "remark-deflist": "^1.0.0", - "remark-math": "^6.0.0", - "remark-yaml-to-table": "github:seqeralabs/remark-yaml-to-table", "webpack-dev-server": "^5.2.1", "yaml": "^2.8.1" }, "devDependencies": { "@docusaurus/eslint-plugin": "^3.9.2", - "@docusaurus/module-type-aliases": "^3.9.2", "@tsconfig/docusaurus": "^2.0.3", - "autoprefixer": "^10.4.16", "dotenv": "^17.2.3", "eslint": "^8.56.0", "eslint-plugin-import": "^2.29.1", @@ -82,10 +66,8 @@ "gray-matter": "^4.0.3", "markdownlint-cli2": "^0.20.0", "netlify-plugin-cache": "^1.0.3", - "postcss": "^8.4.32", "prettier": "^3.6.2", "simple-git": "^3.19.1", - "tailwindcss": "^4.1.12", "typescript": "^5.8.3" }, "browserslist": { @@ -95,9 +77,9 @@ "not op_mini all" ], "development": [ - "last 1 chrome version", - "last 1 firefox version", - "last 1 safari version" + "last 3 chrome version", + "last 3 firefox version", + "last 5 safari version" ] }, "engines": { diff --git a/platform-api-docs/docs/info/actions.info.api.mdx b/platform-api-docs/docs/info/actions.info.api.mdx index 5e8f3a121..00b67516d 100644 --- a/platform-api-docs/docs/info/actions.info.api.mdx +++ b/platform-api-docs/docs/info/actions.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Actions](https://docs.seqera.io/platform-cloud/pipeline-actions/overview) enable event-based pipeline execution, such as triggering a pipeline launch with a GitHub webhook whenever the pipeline repository is updated. Seqera Platform currently offers support for native GitHub webhooks and a general Tower webhook that can be invoked programmatically. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/actions/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/actions/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/actions/request-bodies.yml} diff --git a/platform-api-docs/docs/info/avatars.info.api.mdx b/platform-api-docs/docs/info/avatars.info.api.mdx index 67e16135b..b544188b6 100644 --- a/platform-api-docs/docs/info/avatars.info.api.mdx +++ b/platform-api-docs/docs/info/avatars.info.api.mdx @@ -13,10 +13,10 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + Manage avatar images. -### Path and query parameters +### Path and query parameters -::table{file=parameter-tables/avatars/parameters.yml} \ No newline at end of file +::table{file=parameter-tables/avatars/parameters.yml} diff --git a/platform-api-docs/docs/info/compute-envs.info.api.mdx b/platform-api-docs/docs/info/compute-envs.info.api.mdx index e38fd7d3e..d9b17c94d 100644 --- a/platform-api-docs/docs/info/compute-envs.info.api.mdx +++ b/platform-api-docs/docs/info/compute-envs.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Compute environments](https://docs.seqera.io/platform-cloud/compute-envs/overview) define the execution platform where a pipeline or [Studio](https://docs.seqera.io/platform-cloud/studios) will run. Compute environments enable users to launch pipelines and studios on a growing number of **cloud** and **on-premises** platforms. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/compute-envs/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/compute-envs/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/compute-envs/request-bodies.yml} diff --git a/platform-api-docs/docs/info/credentials.info.api.mdx b/platform-api-docs/docs/info/credentials.info.api.mdx index 70c434e02..65fe7475f 100644 --- a/platform-api-docs/docs/info/credentials.info.api.mdx +++ b/platform-api-docs/docs/info/credentials.info.api.mdx @@ -13,16 +13,16 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + Credentials store the access keys and tokens for your [compute environments](https://docs.seqera.io/platform-cloud/compute-envs/overview), [Git hosting services](https://docs.seqera.io/platform-cloud/git/overview), and container registries in Seqera Platform. Container registry credentials are used by the [Wave container service](https://docs.seqera.io/wave) to authenticate to private and public container registries like Docker Hub, Google Artifact Registry, Quay, etc. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/credentials/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/credentials/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/credentials/request-bodies.yml} diff --git a/platform-api-docs/docs/info/data-links.info.api.mdx b/platform-api-docs/docs/info/data-links.info.api.mdx index 0f8e27c07..6da817d2a 100644 --- a/platform-api-docs/docs/info/data-links.info.api.mdx +++ b/platform-api-docs/docs/info/data-links.info.api.mdx @@ -13,16 +13,16 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; -[Data Explorer](https://docs.seqera.io/platform-cloud/data/data-explorer) enables you to browse and interact with remote data repositories from organization workspaces in Seqera Platform. It supports AWS S3, Azure Blob Storage, and Google Cloud Storage repositories. -Data links are custom bucket directory paths (for new or existing buckets) added to Data Explorer in organization workspaces. To add a data link, the workspace must contain [credentials](https://docs.seqera.io/platform-cloud/credentials/overview) with permissions to access the data. +[Data Explorer](https://docs.seqera.io/platform-cloud/data/data-explorer) enables you to browse and interact with remote data repositories from organization workspaces in Seqera Platform. It supports AWS S3, Azure Blob Storage, and Google Cloud Storage repositories. -### Path and query parameters +Data links are custom bucket directory paths (for new or existing buckets) added to Data Explorer in organization workspaces. To add a data link, the workspace must contain [credentials](https://docs.seqera.io/platform-cloud/credentials/overview) with permissions to access the data. + +### Path and query parameters ::table{file=parameter-tables/data-links/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/data-links/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/data-links/request-bodies.yml} diff --git a/platform-api-docs/docs/info/datasets.info.api.mdx b/platform-api-docs/docs/info/datasets.info.api.mdx index 32f039fae..acac290ad 100644 --- a/platform-api-docs/docs/info/datasets.info.api.mdx +++ b/platform-api-docs/docs/info/datasets.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Datasets](https://docs.seqera.io/platform-cloud/data/datasets) are CSV (comma-separated values) and TSV (tab-separated values) files stored in a workspace. They are used as inputs to pipelines to simplify data management, minimize user data-input errors, and facilitate reproducible workflows. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/datasets/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/datasets/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/datasets/request-bodies.yml} diff --git a/platform-api-docs/docs/info/ga4gh.info.api.mdx b/platform-api-docs/docs/info/ga4gh.info.api.mdx index c81c44b8f..c628d6cc3 100644 --- a/platform-api-docs/docs/info/ga4gh.info.api.mdx +++ b/platform-api-docs/docs/info/ga4gh.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; -The [GA4GH Workflow Execution Service (WES)](https://www.ga4gh.org/product/workflow-execution-service-wes/) is a protocol for running the same genomic data analysis in multiple cloud environments. Use GA4GH WES endpoints to send the same workflow to different compute centres and receive reliable, consistent results, enhancing the reproducibility and reusability of genomic analyses. -### Path and query parameters +The [GA4GH Workflow Execution Service (WES)](https://www.ga4gh.org/product/workflow-execution-service-wes/) is a protocol for running the same genomic data analysis in multiple cloud environments. Use GA4GH WES endpoints to send the same workflow to different compute centres and receive reliable, consistent results, enhancing the reproducibility and reusability of genomic analyses. + +### Path and query parameters ::table{file=parameter-tables/ga4gh/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/ga4gh/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/ga4gh/request-bodies.yml} diff --git a/platform-api-docs/docs/info/identities.info.api.mdx b/platform-api-docs/docs/info/identities.info.api.mdx index 473371b50..42c2b844b 100644 --- a/platform-api-docs/docs/info/identities.info.api.mdx +++ b/platform-api-docs/docs/info/identities.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Managed identities](https://docs.seqera.io/platform-cloud/credentials/managed_identities) offer significant advantages for high performance computing (HPC) environments by enabling granular access control for individual workspace users. Unlike traditional SSH credentials that grant all workspace users access to HPC clusters using the same set of credentials, managed identities ensure each user’s activity is logged under their own credentials. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/identities/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/identities/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/identities/request-bodies.yml} diff --git a/platform-api-docs/docs/info/labels.info.api.mdx b/platform-api-docs/docs/info/labels.info.api.mdx index 9af799b98..e3c1747b4 100644 --- a/platform-api-docs/docs/info/labels.info.api.mdx +++ b/platform-api-docs/docs/info/labels.info.api.mdx @@ -13,18 +13,18 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; -Labels endpoints in the Seqera Platform API are used to manage both labels and resource labels. + +Labels endpoints in the Seqera Platform API are used to manage both labels and resource labels. [Labels](https://docs.seqera.io/platform-cloud/labels/overview) are workspace-specific free-text annotations that can be applied to pipelines, actions, or workflow runs, either during or after creation. Use labels to organize your work and filter key information. [Resource labels](https://docs.seqera.io/platform-cloud/resource-labels/overview) provide a flexible tagging system for annotation and tracking of the cloud services consumed by a run. Resource labels are sent to the service provider for each cloud compute environment in `key=value` format. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/labels/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/labels/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/labels/request-bodies.yml} diff --git a/platform-api-docs/docs/info/organizations.info.api.mdx b/platform-api-docs/docs/info/organizations.info.api.mdx index 63ae54e42..244c92bae 100644 --- a/platform-api-docs/docs/info/organizations.info.api.mdx +++ b/platform-api-docs/docs/info/organizations.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Organizations](https://docs.seqera.io/platform-cloud/orgs-and-teams/organizations) are the top-level structure in Seqera Platform, containing workspaces, members, and teams. Organization owners can add or remove members from an organization or workspace, and can allocate specific access roles within workspaces. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/orgs/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/orgs/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/orgs/request-bodies.yml} diff --git a/platform-api-docs/docs/info/pipelines.info.api.mdx b/platform-api-docs/docs/info/pipelines.info.api.mdx index 136a587ab..bfd4f4a84 100644 --- a/platform-api-docs/docs/info/pipelines.info.api.mdx +++ b/platform-api-docs/docs/info/pipelines.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + A [pipeline](https://docs.seqera.io/platform-cloud/launch/launchpad) is a repository containing a Nextflow workflow, a compute environment, and pipeline parameters. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/pipelines/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/pipelines/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/pipelines/request-bodies.yml} diff --git a/platform-api-docs/docs/info/platforms.info.api.mdx b/platform-api-docs/docs/info/platforms.info.api.mdx index 5d481cda3..f44d056c7 100644 --- a/platform-api-docs/docs/info/platforms.info.api.mdx +++ b/platform-api-docs/docs/info/platforms.info.api.mdx @@ -13,10 +13,10 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + Use the Platforms API to retrieve the details of available computing platforms (such as AWS Batch, Google Cloud Batch, and Grid Engine) in Seqera. -### Path and query parameters +### Path and query parameters -::table{file=parameter-tables/platforms/parameters.yml} \ No newline at end of file +::table{file=parameter-tables/platforms/parameters.yml} diff --git a/platform-api-docs/docs/info/secrets.info.api.mdx b/platform-api-docs/docs/info/secrets.info.api.mdx index c2ad8c80e..a9af62f73 100644 --- a/platform-api-docs/docs/info/secrets.info.api.mdx +++ b/platform-api-docs/docs/info/secrets.info.api.mdx @@ -13,14 +13,14 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + [Secrets](https://docs.seqera.io/platform-cloud/secrets/overview) store the keys and tokens used by workflow tasks to interact with external systems, such as a password to connect to an external database or an API token. -### Path and query parameters +### Path and query parameters ::table{file=parameter-tables/pipeline-secrets/parameters.yml} -### Request body parameters +### Request body parameters -::table{file=parameter-tables/pipeline-secrets/request-bodies.yml} \ No newline at end of file +::table{file=parameter-tables/pipeline-secrets/request-bodies.yml} diff --git a/platform-api-docs/docs/info/seqera-api.info.mdx b/platform-api-docs/docs/info/seqera-api.info.mdx index 8cb9774dd..fe197ff7c 100644 --- a/platform-api-docs/docs/info/seqera-api.info.mdx +++ b/platform-api-docs/docs/info/seqera-api.info.mdx @@ -15,7 +15,7 @@ import SchemaTabs from "@theme/SchemaTabs"; import TabItem from "@theme/TabItem"; import Export from "@theme/ApiExplorer/Export"; import MDXComponents from "@theme-original/MDXComponents"; -import Button from "@site/src/components/Button"; + >; - id?: string; - children: React.ReactNode; -}; - -const Card: React.FC = ({ children, to, title, Img, id }) => { - const isExternal = to?.startsWith("http"); - - if (isExternal) - return ( - - {Img ? ( -
- -
- ) : ( -

{title}

- )} - {children} - - ); - - return ( - - {Img ? ( -
- -
- ) : ( -

{title}

- )} - {children} - - ); -}; - -export default Card; diff --git a/src/components/Card/styles.module.css b/src/components/Card/styles.module.css deleted file mode 100644 index d6a696e39..000000000 --- a/src/components/Card/styles.module.css +++ /dev/null @@ -1,66 +0,0 @@ -.card { - display: block; - padding: 20px; - border-radius: 16px; - background: white; - border-color: var(--ifm-toc-border-color); - font-size: 14px; - color: #160f26; - transition: all 0.3s; -} - -.card h3 { - margin-top: 0; - margin-bottom: 12px; - order: 1; -} - -.card .description { - word-wrap: break-word; - overflow-wrap: break-word; - hyphens: auto; - line-height: 1.5; -} - -.card ul { - list-style: none; - padding: 0; - margin: 0; -} -.card:hover { - text-decoration: none; - /* transform: scale(1.01); */ - box-shadow: 0 0 15px rgba(84, 188, 159); -} -.card.nextflow:hover { - box-shadow: 0 0 15px rgba(84, 188, 159); -} -.card.wave:hover { - box-shadow: 0 0 15px rgba(90, 147, 248); -} -.card.fusion:hover { - box-shadow: 0 0 15px rgba(232, 114, 103); -} -.card.multiqc:hover { - box-shadow: 0 0 15px rgba(226, 134, 80); -} -.card.platform:hover { - box-shadow: 0 0 15px #110c1c; -} -.card.platform svg { - height: 25px; - width: auto; - max-width: 100%; -} -html[data-theme="dark"] { - & .card { - background: rgba(0, 0, 0, 0.5); - color: var(--color-brand-300); - & svg path[fill="#160F26"] { - fill: var(--color-brand-200); - } - } - & .card.platform:hover { - box-shadow: 0 0 15px rgba(255, 255, 255, 0.5); - } -} diff --git a/src/components/Grid/index.tsx b/src/components/Grid/index.tsx deleted file mode 100644 index b3fd99c9e..000000000 --- a/src/components/Grid/index.tsx +++ /dev/null @@ -1,18 +0,0 @@ -import React from "react"; -import clsx from "clsx"; - -import styles from "./styles.module.css"; - -const Grid = ({ children, ...variants }) => { - return ( -
- {children} -
- ); -}; - -export default Grid; diff --git a/src/components/Grid/styles.module.css b/src/components/Grid/styles.module.css deleted file mode 100644 index 253c9ffda..000000000 --- a/src/components/Grid/styles.module.css +++ /dev/null @@ -1,12 +0,0 @@ -.grid { - display: flex; - flex-wrap: wrap; - margin: -8px; -} -.grid > div { - padding: 8px; - width: 20%; -} -.grid.vertical > div { - width: 100%; -} diff --git a/src/css/api.css b/src/css/api.css deleted file mode 100644 index 84e6bff7e..000000000 --- a/src/css/api.css +++ /dev/null @@ -1,108 +0,0 @@ - -.openapi__method-endpoint-path { - margin-top: 0; - font-size: 12px!important; -} - -.menu__list-item--deprecated { - display: flex; - flex-direction: row; - /* .menu__link { - position: relative; - &:after { - text-transform: uppercase; - content: 'Deprecated'; - color: #DC3545; - font-size: 8px; - padding-left: .25rem; - font-weight: 600; - } - } */ - &:before { - opacity: .4; - } -} - -[data-theme="light"] { - .navbar-sidebar .menu__list-item--deprecated .menu__link, - nav.menu .menu__list .menu__list-item--deprecated .menu__link { - color: var(--color-gray-800); - } -} - -[data-theme="light"] .navbar-sidebar .menu__link:before, -[data-theme="dark"] .navbar-sidebar .menu__link:before, -[data-theme="light"] nav.menu .menu__list .menu__link:before, -[data-theme="dark"] nav.menu .menu__list .menu__link:before { - margin-right: 5px; -} - -.api-method { - position: relative; - display: flex; - flex-direction: row; - align-items: center; - flex: none; - .menu__link { - &:before { - text-transform: uppercase; - font-size: 7px; - font-weight: 600; - display: flex; - justify-content: center; - flex: none; - align-items: center; - height: 20px; - width: 35px; - padding: 3px; - text-align: center; - } - } - .menu__link--active { - &:before { - background: white; - } - } - &:hover { - background: var(--color-blu-100); - border-radius: 4px; - } - &.post { - .menu__link:before { - content: 'Post'; - border: 1px solid var(--color-nextflow-600); - } - } - &.get { - .menu__link:before { - content: 'Get'; - border: 1px solid var(--color-wave-600); - } - } - &.put { - .menu__link:before { - content: 'Put'; - border: 1px solid var(--color-multiqc-400); - } - } - &.delete { - .menu__link:before { - content: 'Delete'; - border: 1px solid #DC3545; - } - } -} - -[data-theme="dark"] { - .api-method { - .menu__link--active { - &:before { - background: transparent; - } - } - } - } - - .openapi-security__summary-header { - margin-top: 0; - } \ No newline at end of file diff --git a/src/css/components/box.css b/src/css/components/box.css deleted file mode 100644 index 074505565..000000000 --- a/src/css/components/box.css +++ /dev/null @@ -1,21 +0,0 @@ -.box { - border: 1px solid transparent; - background: rgba(0, 0, 0, 0.5); - color: white; - flex: 1 1 auto; - display: flex; - align-items: center; - justify-content: center; -} -@media (min-width: 768px) { - .box { - border-radius: 16px; - } -} - -html[data-theme="light"] { - & .box { - background: white; - color: var(--color-brand); - } -} diff --git a/src/css/components/checklist.css b/src/css/components/checklist.css deleted file mode 100644 index bf4ec7e88..000000000 --- a/src/css/components/checklist.css +++ /dev/null @@ -1,20 +0,0 @@ -ul.checklist { - list-style: none; - margin: 0; - padding: 0; - & li { - position: relative; - padding-left: 40px; - margin-top: 10px; - &:before { - content: "✓"; - display: block; - position: absolute; - top: calc(50% - 15px); - left: 0; - line-height: 30px; - font-size: 30px; - color: var(--color-blu); - } - } -} diff --git a/src/css/def-list.css b/src/css/def-list.css deleted file mode 100644 index e3139ad89..000000000 --- a/src/css/def-list.css +++ /dev/null @@ -1,27 +0,0 @@ -/* Style definition lists */ -dl { - margin: 1rem 0; -} - -dt { - margin-top: 0.5rem; - margin-bottom: 0.5rem; -} - -dd { - margin-left: 2rem; - margin-top: 0.5rem; - margin-bottom: 0.5rem; -} - -dd ul, dd ol { - margin-left: 0; - padding-left: 1.2rem; -} - -dd li { - margin-bottom: 0.25rem; - text-indent: -1.2rem; - padding-left: 1.2rem; - margin-bottom: 0.5rem; -} diff --git a/src/css/fonts/degular.css b/src/css/fonts/degular.css deleted file mode 100644 index c38bd6303..000000000 --- a/src/css/fonts/degular.css +++ /dev/null @@ -1,55 +0,0 @@ -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Thin.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Thin.woff") format("woff"); - font-weight: 200; - font-style: thin; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Light.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Light.woff") format("woff"); - font-weight: 300; - font-style: light; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Regular.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Regular.woff") format("woff"); - font-weight: 400; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Medium.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Medium.woff") format("woff"); - font-weight: 500; - font-style: medium; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Semibold.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Semibold.woff") format("woff"); - font-weight: 600; - font-style: semibold; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Bold.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Bold.woff") format("woff"); - font-weight: 700; - font-style: bold; -} - -@font-face { - font-family: "Degular"; - src: url("/static/fonts/degular/Degular-Black.woff2") format("woff2"); - src: url("/static/fonts/degular/Degular-Black.woff") format("woff"); - font-weight: 800; - font-style: black; -} diff --git a/src/css/fonts/inter.css b/src/css/fonts/inter.css deleted file mode 100644 index dd7810f95..000000000 --- a/src/css/fonts/inter.css +++ /dev/null @@ -1,110 +0,0 @@ -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-ExtraLight.eot"); - src: - url("/static/fonts/inter/Inter-ExtraLight.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-ExtraLight.svg#Inter-ExtraLight") - format("svg"), - url("/static/fonts/inter/Inter-ExtraLight.ttf") format("truetype"), - url("/static/fonts/inter/Inter-ExtraLight.woff") format("woff"), - url("/static/fonts/inter/Inter-ExtraLight.woff2") format("woff2"); - font-weight: 100; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Thin.eot"); - src: - url("/static/fonts/inter/Inter-Thin.eot?#iefix") format("embedded-opentype"), - url("/static/fonts/inter/Inter-Thin.svg#Inter-Thin") format("svg"), - url("/static/fonts/inter/Inter-Thin.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Thin.woff") format("woff"), - url("/static/fonts/inter/Inter-Thin.woff2") format("woff2"); - font-weight: 200; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Light.eot"); - src: - url("/static/fonts/inter/Inter-Light.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-Light.svg#Inter-Light") format("svg"), - url("/static/fonts/inter/Inter-Light.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Light.woff") format("woff"), - url("/static/fonts/inter/Inter-Light.woff2") format("woff2"); - font-weight: 300; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Regular.eot"); - src: - url("/static/fonts/inter/Inter-Regular.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-Regular.svg#Inter-Regular") format("svg"), - url("/static/fonts/inter/Inter-Regular.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Regular.woff") format("woff"), - url("/static/fonts/inter/Inter-Regular.woff2") format("woff2"); - font-weight: 400; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Medium.eot"); - src: - url("/static/fonts/inter/Inter-Medium.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-Medium.svg#Inter-Medium") format("svg"), - url("/static/fonts/inter/Inter-Medium.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Medium.woff") format("woff"), - url("/static/fonts/inter/Inter-Medium.woff2") format("woff2"); - font-weight: 500; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-SemiBold.eot"); - src: - url("/static/fonts/inter/Inter-SemiBold.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-SemiBold.svg#Inter-SemiBold") format("svg"), - url("/static/fonts/inter/Inter-SemiBold.ttf") format("truetype"), - url("/static/fonts/inter/Inter-SemiBold.woff") format("woff"), - url("/static/fonts/inter/Inter-SemiBold.woff2") format("woff2"); - font-weight: 600; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Bold.eot"); - src: - url("/static/fonts/inter/Inter-Bold.eot?#iefix") format("embedded-opentype"), - url("/static/fonts/inter/Inter-Bold.svg#Inter-Bold") format("svg"), - url("/static/fonts/inter/Inter-Bold.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Bold.woff") format("woff"), - url("/static/fonts/inter/Inter-Bold.woff2") format("woff2"); - font-weight: 700; - font-style: normal; -} - -@font-face { - font-family: "Inter"; - src: url("/static/fonts/inter/Inter-Black.eot"); - src: - url("/static/fonts/inter/Inter-Black.eot?#iefix") - format("embedded-opentype"), - url("/static/fonts/inter/Inter-Black.svg#Inter-Black") format("svg"), - url("/static/fonts/inter/Inter-Black.ttf") format("truetype"), - url("/static/fonts/inter/Inter-Black.woff") format("woff"), - url("/static/fonts/inter/Inter-Black.woff2") format("woff2"); - font-weight: 800; - font-style: normal; -} diff --git a/src/css/main.css b/src/css/main.css deleted file mode 100644 index 6e7dd738d..000000000 --- a/src/css/main.css +++ /dev/null @@ -1,467 +0,0 @@ -@import "tailwindcss"; -@config "../../tailwind.config.js"; - -:root { - --ifm-navbar-height: 4rem; - --ifm-color-secondary-contrast-background: #f7f7f7; -} - -@layer components { - .container-xl { - @apply mx-auto; - max-width: 1440px; - } - - .container-lg { - @apply mx-auto; - max-width: 1248px; - } - - .container-md { - @apply mx-auto; - max-width: 1008px; - } - - .container-sm { - @apply mx-auto; - max-width: 900px; - } - - .typo-display, - .typo-display span { - @apply font-display font-semibold text-2xl md:text-4xl lg:text-6xl antialiased; - } - - .typo-hero { - @apply font-display font-semibold text-5xl lg:text-6xl antialiased; - } - - .typo-h1 { - @apply font-display font-semibold text-2xl md:text-4xl lg:text-5xl antialiased; - } - - .typo-h2 { - @apply font-display font-semibold text-2xl md:text-3xl lg:text-4xl antialiased; - } - - .typo-h3 { - @apply font-display font-semibold text-2xl md:text-3xl antialiased; - } - - .typo-h4 { - @apply font-display font-semibold text-xl md:text-2xl antialiased; - } - - .typo-h5 { - @apply font-display text-base font-semibold antialiased tracking-wide; - } - - .typo-h6 { - @apply font-display text-lg font-semibold antialiased; - } - - .typo-blockquote { - @apply font-body text-xl antialiased; - } - - .typo-intro { - @apply font-body text-base font-semibold antialiased; - } - - .typo-body { - @apply text-base font-light antialiased; - font-weight: 400; - } - - .typo-small { - @apply font-body text-sm antialiased; - font-weight: 400; - } -} -@media (min-width: 996px) { - :root { - --ifm-navbar-height: 7rem; - } -} - -.navbar { - align-items: center; - ul, - li { - list-style-type: none; - margin-inline-start: 0; - padding: 0; - } -} -/* Hide the top navbar on desktop */ -@media (min-width: 996px) { - .navbar { - height: 0; - width: 0; - display: none; - } -} - -/* Custom styling for sidebar nav links */ -.theme-doc-sidebar-container > div { - top: 74px; -} -nav.menu .menu__list .menu__link { - border-radius: 5px; - font-weight: 400; - font-size: 0.9rem; -} -.theme-doc-sidebar-menu .menu__link { - font-weight: 400; -} -nav.menu .menu__list .menu__link--active:not(.menu__link--sublist) { - font-weight: 700; -} -nav.menu .menu__list .menu__link--sublist-caret:after, -.menu__caret { - width: 40px; -} -.menu__caret:before { - background-image: url("data:image/svg+xml,%3Csvg width='25' height='24' viewBox='0 0 25 24' fill='none' xmlns='http://www.w3.org/2000/svg'%3E%3Cpath d='M12.4943 10.4038L7.7174 15.1615L7.16162 14.6057L12.4943 9.29225L17.8078 14.6057L17.252 15.1615L12.4943 10.4038Z' fill='%23160F26'/%3E%3C/svg%3E%0A"); - transform: rotate(0deg); - width: 33px; - background-size:100%; - position: absolute; - right: 5px; - @media (min-width: 996px) { - width: 28px; - } -} -.menu__caret:hover { - background: rgba(0,0,0,.1); -} -nav.menu .menu__list-item--collapsed .menu__link--sublist:after, -.menu__list-item--collapsed .menu__caret:before { - transform: rotate(90deg); -} -[data-theme="light"] nav.menu .menu__list { - & .menu__link { - color: #000; - } - & .menu__link--active:not(.menu__link--sublist) { - background: #e8ebfc; - color: #4256e7; - } -} -[data-theme="dark"] nav.menu .menu__list { - & .menu__link { - color: rgba(255, 255, 255, 0.9); - } - & .menu__link--active:not(.menu__link--sublist) { - background: rgba(0, 0, 0, 0.2); - color: #98a3ff; - } -} - -/* Allow Code Block Expansion */ -.theme-code-block pre { - max-height: none; - height: auto; - overflow-y: visible; -} - -.theme-code-block code { - max-height: none; - height: auto; - overflow-y: visible; -} - -/* mobile nav updates */ -.navbar__toggle { - position: absolute; - right: 0rem; -} - -.navbar-sidebar { - width: 100vw; -} - -.navbar-sidebar { - top: 0; - left: 0; - right: 0; - height: 100vh; - width: 100%; - overflow: hidden; - background-color: var( - --ifm-navbar-background-color - ); /* Use your site's navbar color */ - position: fixed; - z-index: 100; - visibility: hidden; - opacity: 0; - transition: opacity 0.3s ease; -} - -/* When sidebar is open (controlled by Docusaurus via class on ) */ -.navbar-sidebar--show > .navbar-sidebar { - width: 100%; - height: 100vh; /* Expand height */ - visibility: visible; - opacity: 1; - overflow-y: scroll; -} - -.footer--light { - background-color: #fff; /* your custom light background color */ - color: #160f26; -} - -.footer__logo { - margin-top: 0; -} -.breadcrumbs { - display: inline-block; - margin-top: 0; -} -.breadcrumbs__link { - padding: 0; -} - -.breadcrumbs__link:any-link:hover { - background: none; -} - -.breadcrumbs__item--active .breadcrumbs__link { - color: var(--color-brand); - background: none; -} -.breadcrumbs__link svg { - padding-top: 4px; - margin-bottom: -1px; -} - -.table-of-contents { - margin-top: 0; -} -.table-of-contents__link:hover, -.table-of-contents__link:hover code, -.table-of-contents__link--active, -.table-of-contents__link--active code { - color: var(--color-blu); -} - -.tags { - &:hover { - border: 1px solid var(--color-blu); - } -} - -.theme-edit-this-page { - display: flex; - flex-direction: row; - align-items: center; - - svg { - width: 15px; - } -} - -ul { - padding-left: 1.5rem; - margin-top: 1rem; - margin-bottom: 1rem; - list-style-type: disc; - list-style-position: outside; -} - -li { - margin-top: 0.25rem; - margin-bottom: 0.25rem; -} - -ol { - padding-left: 1.5rem; - margin-top: 1rem; - margin-bottom: 1rem; - list-style-type: decimal; - list-style-position: outside; -} - -ol li { - margin-top: 0.25rem; - margin-bottom: 0.25rem; -} - -.table-of-contents__link--active { - font-weight: 500; -} - -.admonition-icon { - width: 10px; - svg { - width: 10px; - } -} -.theme-admonition { - div[class*="admonitionHeading"] { - display: flex; - flex-direction: row; - align-items: center; - } - svg { - &:first-child { - width: 13px; - } - } -} - -/* Mobile nav */ -html[data-theme="dark"] { - .menu__list-item-collapsible:hover { - background: var(--color-gray-900); - } - - .menu__link:hover { - background: var(--color-gray-900); - } - - nav.menu .menu__list .menu__link--active:not(.menu__link--sublist) { - background: var(--color-blu-700); - color: var(--color-blu-100); - } -} - -.table-of-contents__link { - &:hover { - color: var(--color-brand-1000); - opacity: 1; - } -} - -details.details { - border-color: var(--color-blu); -} - -.details { - border-color: var(--color-blu); -} - -.main-wrapper { - .container { - margin-top: 0rem; - @media (min-width: 996px) { - margin-top: 2rem; - } - } -} - -table { - --ifm-table-background: rgba(255,255,255,.1); - thead { - background: var(--color-gray-200); - tr { - border-bottom: none; - } - } - tr:hover { - background: var(--color-gray-200); - } -} - -html[data-theme="dark"]{ - --ifm-table-background: rgba(0,0,0,.7); - table { - thead { - background: rgba(0,0,0,.3); - } - tr:nth-child(1n) { - background: transparent; - } - tr:nth-child(2n) { - background: rgba(0,0,0,.2); - } - tr:hover { - background: rgba(255,255,255,.05); - } - } -} - -.navbar-sidebar { - height: 100%; - min-height: 100vh; - .menu__list { - .menu__list-item:nth-child(3) { - border-left: 1px solid var(--color-gray-600); - padding-left: 5px; - } - li:nth-child(3){ - margin-left: 20px; - } - } -} - -.theme-doc-toc-mobile { - .clean-btn { - &:after { - background-image: url("data:image/svg+xml,%3Csvg width='25' height='24' viewBox='0 0 25 24' fill='none' xmlns='http://www.w3.org/2000/svg'%3E%3Cpath d='M12.4943 10.4038L7.7174 15.1615L7.16162 14.6057L12.4943 9.29225L17.8078 14.6057L17.252 15.1615L12.4943 10.4038Z' fill='%23160F26'/%3E%3C/svg%3E%0A"); - } - } -} - -/* removes jumping effect when sidebar accordion open or closes */ -.menu__list .menu__list { - margin-top: 0; -} - -/* Font rendering + code block tweaks */ -article .markdown { - -webkit-font-smoothing: auto; - line-height: 24px; -} -:root { - --ifm-code-border-radius: 0; -} -article .markdown code { - font-size: 75%; - border-radius: 0; - border: 1px solid #e1e4e5; -} -article .markdown :not(pre) > code { - color: #C3514D; - padding: 2px 5px; - background: #fff; -} -article .markdown pre code { - background-color: #f8f8f8; - font-size: .75rem !important; -} -html[data-theme="dark"]{ - article .markdown code { - background: #1C1C1E; - border: 1px solid rgba(255,255,255,.5); - } - article .markdown :not(pre) > code { - color: #E15361; - } - - article .markdown pre code { - background-color: #353437; - } -} - -/* Enhanced line highlighting for better visibility */ -:root { - --docusaurus-highlighted-code-line-bg: rgba(66, 86, 231, 0.15); -} - -.theme-code-block-highlighted-line { - background-color: var(--docusaurus-highlighted-code-line-bg); - border-left: 3px solid #4256e7; - padding-left: 10px; - margin-left: -13px; - display: block; -} - -html[data-theme="dark"] { - --docusaurus-highlighted-code-line-bg: rgba(152, 163, 255, 0.12); -} - -html[data-theme="dark"] .theme-code-block-highlighted-line { - border-left: 3px solid var(--color-blu-300); -} diff --git a/src/css/misc.css b/src/css/misc.css deleted file mode 100644 index 2342deed5..000000000 --- a/src/css/misc.css +++ /dev/null @@ -1,68 +0,0 @@ -/* Hide version dropdown on Wave docs */ -html:not(.plugin-id-platform) .navbar .dropdown { - display: none; -} - -/* Center katex math */ -.katex-display, -.katex-display > .katex { - text-align: left; -} -/* Adjust font size for certain equations */ -.katex .vlist .mord { - font-size: 0.9em; -} - -ol li > p:first-child { - margin-top: 0; -} -ol li > p:last-child { - margin-bottom: 0; -} - -/** -Material Design Icons (SVG) -*/ -.mdi-icon { - vertical-align: middle; - margin: -4px; -} - -/* Inject theme-specific styling for
elements */ -[data-theme="light"] { - --details-bg: #fff; - --details-code-bg: rgb(246, 247, 248); -} - -[data-theme="dark"] { - --details-bg: rgb(25, 60, 71); - --details-code-bg: var(--ifm-code-background); -} - -details { - background-color: var(--details-bg); - border-top-width: 0; - border-bottom-width: 0; - border-right-width: 0; - border-left-width: 5px; -} - -details.alert > div > div { - border-top: 1px solid #000; -} - -details.alert code { - /* var(--ifm-code-background) */ - background-color: var(--details-code-bg); -} - - -.theme-admonition { - margin: 1rem 0; -} - -/* image on multiqc overview */ -svg.excalidraw { - height: 100%; - max-width: 100%; -} \ No newline at end of file diff --git a/src/css/search.css b/src/css/search.css deleted file mode 100644 index f11bbdd07..000000000 --- a/src/css/search.css +++ /dev/null @@ -1,128 +0,0 @@ -/* Search Box */ -.ais-SearchBox { - margin-bottom: 2rem; -} - -.ais-SearchBox-form { - display: flex; - align-items: center; - background-color: var(--aa-input-background); - border: 1px solid var(--aa-input-border-color); - border-radius: 0.375rem; - padding: 0.5rem; -} - -.ais-SearchBox-input { - flex: 1; - border: none; - background: transparent; - font-size: 1rem; - padding: 0.5rem; - color: var(--aa-text-color); - outline: none; -} - -.ais-SearchBox-submit, -.ais-SearchBox-reset { - background: none; - border: none; - padding: 0.5rem; - color: var(--aa-text-color); - opacity: 0.6; - cursor: pointer; -} - -.ais-SearchBox-submit:hover, -.ais-SearchBox-reset:hover { - opacity: 1; -} - -/* Hits */ -.ais-Hits-list { - list-style: none; - padding: 0; - margin: 0; -} - -.ais-Hits-item { - margin-bottom: 1rem; - background: white; - border-radius: 0.5rem; - overflow: hidden; - transition: all 0.2s ease; -} - -.ais-Hits-item:hover { - transform: translateY(-2px); - box-shadow: - 0 4px 6px -1px rgba(0, 0, 0, 0.1), - 0 2px 4px -1px rgba(0, 0, 0, 0.06); -} - -/* Pagination */ -.ais-Pagination { - margin-top: 2rem; -} - -.ais-Pagination-list { - display: flex; - justify-content: center; - align-items: center; - list-style: none; - padding: 0; -} - -.ais-Pagination-item { - margin: 0 0.25rem; -} - -.ais-Pagination-link { - display: block; - padding: 0.5rem 1rem; - border-radius: 0.375rem; - color: var(--aa-text-color); - text-decoration: none; - transition: all 0.2s ease; -} - -.ais-Pagination-item--selected .ais-Pagination-link { - background-color: var(--aa-primary-color); - color: white; -} - -.ais-Pagination-item--disabled .ais-Pagination-link { - opacity: 0.5; - cursor: not-allowed; -} - -/* Dark mode support */ -[data-theme="dark"] { - .ais-SearchBox-form { - background-color: var(--aa-searchbox-background); - border-color: var(--aa-searchbox-border-color); - } - - .ais-Hits-item { - background: var(--aa-background-color-dark); - } - - .ais-Pagination-link { - color: var(--aa-text-color-dark); - } - - .aa-DetachedSearchButton { - background: #464646; - border-color: var(--color-gray-800); - box-shadow: none; - &:focus { - border-color: var(--color-gray-800); - box-shadow: none; - } - .aa-SubmitIcon { - color: #f1f1f1; - } - .aa-DetachedSearchButtonPlaceholder { - color: #f1f1f1; - } - } -} diff --git a/src/css/theme-colors.css b/src/css/theme-colors.css deleted file mode 100644 index 4e24dec7c..000000000 --- a/src/css/theme-colors.css +++ /dev/null @@ -1,351 +0,0 @@ -/**********/ -/* FONTS */ -/********/ - -:root { - --ifm-font-family-base: Inter, sans-serif; - --ifm-heading-font-family: Inter, sans-serif; -} - -/***********/ -/* COLORS */ -/*********/ -:root { - --color-blu: var(--color-blu-DEFAULT); - --color-brand: var(--color-brand-DEFAULT); - --color-nextflow: var(--color-nextflow-DEFAULT); - --color-wave: var(--color-wave-DEFAULT); - --color-fusion: var(--color-fusion-DEFAULT); - --color-multiqc: var(--color-multiqc-DEFAULT); - --color-other: var(--color-other-DEFAULT); -} - -/**********************/ -/**** LIGHT THEME ****/ -/********************/ - -html[data-theme="light"] { - /* General */ - --ifm-background-color: white; - --ifm-breadcrumb-color-active: var(--color-blu); - --ifm-link-color: var(--color-blu); - --ifm-font-color-base: #1c1c1e; - - /* Navbar */ - --ifm-background-surface-color: white; - --ifm-navbar-link-color: var(--color-brand); - --ifm-navbar-link-hover-color: var(--color-blu); - --ifm-dropdown-link-color: var(--color-brand); - --docsearch-searchbox-shadow: inset 0 0 0 2px var(--ifm-link-color); - - /* Sidebar */ - --ifm-menu-color-active: white; - --ifm-menu-color-background-active: var(--color-gray-200); - --ifm-menu-color-background-hover: var(--color-blu-100); - - -/* tabs */ ---ifm-tabs-color-active: var(--color-brand); -} - -/* Mobile nav */ -html[data-theme="dark"] .navbar { - box-shadow: none; - border-bottom: 1px solid rgba(255, 255, 255, 0.5); -} - -html[data-theme="light"] .navbar-sidebar { - color: var(--igm-font-color-base); -} -html[data-theme="light"] .navbar-sidebar .menu__link { - color: var(--igm-font-color-base); - font-weight: 400; -} -html[data-theme="light"] .navbar-sidebar .navbar-sidebar__back { - padding: 1rem 1.5rem 0 1.5rem; - margin-top: 10px; - margin-bottom: 1rem; - font-size: .85rem; - background: none; - color: var(--color-seqera-800); -} -html[data-theme="light"] .navbar__toggle.clean-btn { - color: var(--igm-font-color-base); -} - -html[data-theme="light"] .navbar__items--right a:hover { - color: var(--ifm-font-color-base); -} -html[data-theme="light"] .navbar__items--right button { - color: var(--ifm-font-color-base); -} -html[data-theme="light"] .navbar__items--right button:hover { - background-color: var(--color-wave); -} - -/* Sidebar */ -html[data-theme="light"] - .menu__link.menu__link--sublist.menu__link--sublist-caret.menu__link--active { - background-color: var(--color-brand-200); - color: var(--color-brand-1400); -} -.menu__link--sublist-caret:after { - background-image: url("data:image/svg+xml,%3Csvg width='25' height='24' viewBox='0 0 25 24' fill='none' xmlns='http://www.w3.org/2000/svg'%3E%3Cpath d='M12.4943 10.4038L7.7174 15.1615L7.16162 14.6057L12.4943 9.29225L17.8078 14.6057L17.252 15.1615L12.4943 10.4038Z' fill='%23160F26'/%3E%3C/svg%3E%0A"); - - @media (min-width: 996px) { - background-size: 70%; - margin-right: -12px; - } -} - -html[data-theme="light"] .menu__list-item-collapsible--active { - background-color: var(--color-blu-100); -} -html[data-theme="light"] .menu__list-item-collapsible > a.menu__link--active { - color: var(--color-brand-1400); -} -html[data-theme="light"] - .menu__list-item-collapsible--active - > a.menu__link--active { - color: var(--color-brand); -} - -/* Search modal */ - -/* Footer */ -html[data-theme="light"] .footer--dark { - border-top: 1px solid 1px solid var(--ifm-toc-border-color); - --ifm-footer-background-color: white; -} - -/*********************/ -/**** DARK THEME ****/ -/*******************/ - -html[data-theme="dark"] { - /* General */ - --ifm-background-color: #1c1c1e; - --ifm-breadcrumb-color-active: var(--color-blu-300); - --ifm-link-color: var(--color-blu-300); - --ifm-font-color-base: #F1F1F1; - - /* Tables */ - --ifm-table-border-color: var(--color-brand-1000); - --ifm-table-stripe-background: var(--color-gray-1000); - - /* Navbar */ - --ifm-background-surface-color: #1c1c1e; - --ifm-navbar-link-color: #F1F1F1; - --ifm-navbar-link-hover-color: var(--color-blu-100); - - /* Breadcrumbs */ - --ifm-breadcrumb-item-background-active: #1c1c1e; - - /* Sidebar */ - --ifm-toc-border-color: var(--color-brand-1000); - --ifm-menu-color-background-active: #2A2A2A; - --ifm-menu-color-active:#F1F1F1; - --ifm-menu-color-background-hover: var(--color-blu-100); -} - -/* Pagination */ -html[data-theme="light"] .pagination-nav__link:hover { - border-color: var(--color-brand-400); -} -html[data-theme="dark"] .pagination-nav__link { - border-color: var(--color-gray-800); - background: #1c1c1e; -} -html[data-theme="dark"] .pagination-nav__link:hover { - border-color: var(--color-brand-400); -} - -/* Header nav */ -html[data-theme="dark"] .navbar__items--right { - color: #F1F1F1; -} -html[data-theme="dark"] .navbar__items--right button:hover { - background-color: var(--color-wave); -} - -/* Footer */ -html[data-theme="dark"] .footer--dark { - border-top: 1px solid var(--ifm-toc-border-color); - --ifm-footer-background-color: #1c1c1e; -} - -html[data-theme="dark"] .container a { - color: var(--color-blu-300); -} - -/* tabs */ -.tabs__item--active { - border-color: var(--color-blu); - color: var(--color-blu); -} -html[data-theme="dark"] { - .tabs__item--active { - border-color: var(--color-blu-300); - color: var(--color-blu-300); - } -} - -/* navbar */ -html[data-theme="dark"] { - .navbar ul a, .navbar li a{ - color: #F1F1F1; - } - .navbar-sidebar__back { - background: var(--color-blu-700); - } - .menu__link--active:not(.menu__link--sublist) { - background: var(--color-gray-900); - } -} - -/* table of contents, breadcrumbs */ -html[data-theme="dark"] .table-of-contents a { - color: #F1F1F1; -} - -html[data-theme="dark"] - .table-of-contents__link.table-of-contents__link--active { - color: var(--color-blu-300); -} - -html[data-theme="dark"] .table-of-contents__left-border { - border-left: none; -} - -html[data-theme="dark"] .breadcrumbs__item--active .breadcrumbs__link { - color: #F1F1F1; -} - -html[data-theme="dark"] .menu__list-item-collapsible--active { - background: var(--color-blu-500); -} - - -html[data-theme="dark"] .homepage { - a { - &:hover { - border-color: var(--color-gray-900); - } - } - - .tag:hover { - border-color: var(--color-blu-500); - } -} -html[data-theme="dark"] { - --ifm-table-border-color: var(--color-gray-800); -} - -/**********************/ -/**** admonitions ****/ -/********************/ -.theme-admonition { - table { - thead { - background:#F1F1F1; - tr { - border-bottom: none; - } - } - tr { - &:nth-child(even) { - background: #F1F1F1; - } - } - } - a { - text-decoration-thickness: 1px; - text-underline-offset: none; - text-decoration: underline; - } - - code { - background: rgba(255,255,255,.4); - } - -} -/* info and note */ -.theme-admonition.theme-admonition-note, -.theme-admonition.alert--info { - background-color: var(--color-wave-100); - border-color: var(--color-wave-400); - a { - text-decoration-color: var(--color-wave-blu-700); - color: var(--color-blu-700); - &:hover { - color: var(--color-blu-900); - text-decoration-color: var(--color-blu-900); - } - } -} - -/* tip and success */ -.theme-admonition.theme-admonition-tip, -.theme-admonition.theme-admonition-success { - background-color: var(--color-nextflow-100); - border-color: var(--color-nextflow-900); - text-decoration-color: var(--color-nextflow-600); - a { - color: var(--color-nextflow-800); - text-decoration-color: var(--color-nextflow-800); - text-decoration: underline; - &:hover { - color: var(--color-nextflow-900); - } - } -} - - -html[data-theme="dark"] { - pre, code { - background: #403F43; - } - .theme-admonition { - a { - text-decoration: underline; - } - .theme-code-block, - code { - background: #403F43; - } - } - .details.alert--info { - border-color: #F1F1F1; - } - - .theme-doc-version-banner { - background: var(--color-multiqc-1000); - } - - .theme-admonition.theme-admonition-note, - .theme-admonition.alert--info { - background-color: var(--color-wave-1000); - a { - /* text-decoration-color: var(--color-gray-200); - color: var(--color-gray-200); */ - color: inherit; - &:hover { - color: var(--color-gray-400); - text-decoration-color: var(--color-gray-400); - } - } - } - .theme-admonition.alert--success { - background-color: var(--color-nextflow-1000); - border-color: var(--color-nextflow-100); - text-decoration-color: var(--color-nextflow-200); - a { - color: var(--color-nextflow-200); - text-decoration-color: var(--color-nextflow-200); - text-decoration: underline; - &:hover { - color: var(--color-nextflow-400); - } - } - } -} diff --git a/src/css/typography.css b/src/css/typography.css deleted file mode 100644 index f204469ce..000000000 --- a/src/css/typography.css +++ /dev/null @@ -1,92 +0,0 @@ -h1, h2, h3, h4, h5, h6 { - font-family: 'Degular', sans-serif; -} -.markdown > h1, -h1 { - font-size: 2.5rem; - font-weight: 600; - margin-top: 2rem; - margin-bottom: 1rem; - line-height: 1.1; - @media (min-width: 996px) { - font-size: 3.2rem; - } -} - -.markdown > h2, -h2 { - font-size: 2rem; - font-weight: 600; - line-height: 1; - margin-top: 2rem; - margin-bottom: 1rem; - @media (min-width: 996px) { - font-size: 2.5rem; - } -} - -.markdown > h3, -h3 { - font-size: 1.75rem; - font-weight: 600; - margin-top: 2rem; - margin-bottom: 1rem; - line-height: 1.2; - @media (min-width: 996px) { - font-size: 1.8rem; - } -} - -.markdown > h4, -h4 { - font-size: 1.1rem; - font-weight: 600; - margin-top: 1.5rem; - margin-bottom: .45rem; - @media (min-width: 996px) { - font-size: 1.5rem; - } -} - -h5 { - font-size: 1.3rem; - font-weight: 600; - margin: 0.5rem 0; - @media (min-width: 996px) { - font-size: 1.2rem; - } -} - -h6 { - font-size: 1.1rem; - font-weight: 600; - margin: 0.25rem 0; -} - -body { - font-family: 'Inter', 'Helvetica', sans-serif; -} - - -strong { - font-weight: 600; -} -.markdown > p, -p { - margin-bottom: 1.25rem; - line-height: 1.7; - @media (min-width: 996px) { - line-height: 1.6; - } -} - -ol > li { - margin-bottom: 1rem; - line-height: 1.6; -} - -h1,h2,h3,h4,h5,h6 { - pre, code { - font-size: 80%; - } -} \ No newline at end of file diff --git a/src/custom.css b/src/custom.css new file mode 100644 index 000000000..fa4521ec9 --- /dev/null +++ b/src/custom.css @@ -0,0 +1,32 @@ +/* Definition List Styles for remark-deflist */ + +/* Definition list container */ +dl { + margin: 1rem 0; + padding: 0; +} + +/* Definition term (the word being defined) */ +dt { + font-weight: 600; + margin-top: 1rem; + margin-bottom: 0.25rem; + color: var(--ifm-heading-color); +} + +/* First term doesn't need top margin */ +dt:first-child { + margin-top: 0; +} + +/* Definition description */ +dd { + margin-left: 2rem; + margin-bottom: 0.5rem; + padding-left: 0.5rem; +} + +/* Multiple definitions for the same term */ +dd + dd { + margin-top: 0.5rem; +} diff --git a/src/modules/Homepage/Resources/ExternalGuides.tsx b/src/modules/Homepage/Resources/ExternalGuides.tsx deleted file mode 100644 index e06c1f121..000000000 --- a/src/modules/Homepage/Resources/ExternalGuides.tsx +++ /dev/null @@ -1,56 +0,0 @@ -import React from "react"; -import Link from "@docusaurus/Link"; - -type Props = {}; - -const ExternalGuides: React.FC = () => { - return ( - <> -

External guides

-
    -
  • - Overview from 23andMe introducing and describing{" "} - - why they choose Nextflow - {" "} - to orchestrate millions of tasks for their imputation pipelines -
    • -
  • - Nextflow on AWS Batch from the{" "} - - Genomics Workflows on AWS resources - -
    • -
  • - Workshop for{" "} - - Nextflow on AWS Batch - {" "} - from the team at Amazon EC2 Spot -
    • -
  • - - Guide from Google for running - {" "} - Nextflow on Google Cloud using the Google Life Sciences executor -
    • -
  • - Microsoft template for deploying a{" "} - - Nextflow Genomics Cluster - {" "} - in Azure -
    • -
  • - - Quickstart guide{" "} - - from Microsoft Genomics for getting up and running with Nextflow on - Azure -
    • -
- - ); -}; - -export default ExternalGuides; diff --git a/src/modules/Homepage/Resources/Nextflow.tsx b/src/modules/Homepage/Resources/Nextflow.tsx deleted file mode 100644 index 6cec55757..000000000 --- a/src/modules/Homepage/Resources/Nextflow.tsx +++ /dev/null @@ -1,56 +0,0 @@ -import React from "react"; -import Link from "@docusaurus/Link"; - -type Props = {}; - -const Nextflow: React.FC = () => { - return ( - <> -

Nextflow resources

-
    -
  • - Nextflow user documentation for the latest{" "} - stable and{" "} - edge releases. -
    • -
  • - Common{" "} - - usage patterns - {" "} - for writing Nextflow pipelines. -
    • -
  • - Extension packages (X-PACK) for using Nextflow on{" "} - - Amazon Web Services - - , and{" "} - - Google Cloud - - . -
    • -
  • - - Awesome Nextflow - {" "} - – a curated list of Nextflow pipelines. -
    • -
  • - nf-core – a community effort to - collect a curated set of analysis pipelines built using Nextflow. -
    • -
  • - A best-practices resource for executing{" "} - - Nextflow workflows on Kubernetes - - . -
    • -
- - ); -}; - -export default Nextflow; diff --git a/src/modules/Homepage/Resources/Platform.tsx b/src/modules/Homepage/Resources/Platform.tsx deleted file mode 100644 index 567e77e00..000000000 --- a/src/modules/Homepage/Resources/Platform.tsx +++ /dev/null @@ -1,54 +0,0 @@ -import React from "react"; -import Link from "@docusaurus/Link"; - -type Props = {}; - -const Platform: React.FC = () => { - return ( - <> -

Seqera Platform resources

-
    -
  • - The Seqera Platform{" "} - - User documentation - {" "} - is the reference for managing pipelines with Seqera Platform -
    • -
  • - {" "} - - Seqera Command Line Interface - {" "} - brings it to the terminal -
    • -
  • - Repository containing{" "} - - AWS IAM policies - {" "} - to create roles with appropriate Batch Forge and launch permissions -
    • -
  • - For installation and configuration, the Seqera Platform{" "} - - deployment guide - {" "} - provides docs, scripts and detailed instructions. -
    • -
  • - A{" "} - - practical how-to - {" "} - guide for automating workflows - from sequencing data to results using - Tower. -
    • -
- - ); -}; - -export default Platform; diff --git a/src/modules/Homepage/Resources/Training.tsx b/src/modules/Homepage/Resources/Training.tsx deleted file mode 100644 index ffd191ce5..000000000 --- a/src/modules/Homepage/Resources/Training.tsx +++ /dev/null @@ -1,39 +0,0 @@ -import React from "react"; -import Link from "@docusaurus/Link"; - -type Props = {}; - -const Training: React.FC = () => { - return ( -
    -
  • - The Seqera complete{" "} - training material and - workshop for learning Nextflow and Tower -
    • -
  • - The{" "} - - nf-core - {" "} - tutorial — a guide for getting started with developing Nextflow - pipelines using the nf-core framework. -
    • -
  • - A Software Carpentries{" "} - - guide to Nextflow and nf-core under incubation - -
    • -
  • - An{" "} - - introduction to Nextflow course - {" "} - from Uppsala University -
    • -
- ); -}; - -export default Training; diff --git a/src/modules/Homepage/Resources/index.tsx b/src/modules/Homepage/Resources/index.tsx deleted file mode 100644 index 6829b6498..000000000 --- a/src/modules/Homepage/Resources/index.tsx +++ /dev/null @@ -1,28 +0,0 @@ -import React from "react"; - -import Nextflow from "./Nextflow"; -import Platform from "./Platform"; -import Training from "./Training"; -import ExternalGuides from "./ExternalGuides"; - -const Resources = () => { - return ( -
-
- -
-
- -
-
-

Training and workshop material

- -
-
- -
-
- ); -}; - -export default Resources; diff --git a/src/modules/Homepage/images/fusion.inline.svg b/src/modules/Homepage/images/fusion.inline.svg deleted file mode 100644 index 4de39ad1b..000000000 --- a/src/modules/Homepage/images/fusion.inline.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/modules/Homepage/images/home-1a-light.jpg b/src/modules/Homepage/images/home-1a-light.jpg deleted file mode 100644 index 5ce656e23..000000000 Binary files a/src/modules/Homepage/images/home-1a-light.jpg and /dev/null differ diff --git a/src/modules/Homepage/images/home-1a.jpg b/src/modules/Homepage/images/home-1a.jpg deleted file mode 100644 index 5ec77cd08..000000000 Binary files a/src/modules/Homepage/images/home-1a.jpg and /dev/null differ diff --git a/src/modules/Homepage/images/homepage1.jpg b/src/modules/Homepage/images/homepage1.jpg deleted file mode 100644 index 49155a819..000000000 Binary files a/src/modules/Homepage/images/homepage1.jpg and /dev/null differ diff --git a/src/modules/Homepage/images/multiqc.inline.svg b/src/modules/Homepage/images/multiqc.inline.svg deleted file mode 100644 index 785b95663..000000000 --- a/src/modules/Homepage/images/multiqc.inline.svg +++ /dev/null @@ -1,15 +0,0 @@ - - - - - - - - - - - - - - - diff --git a/src/modules/Homepage/images/nextflow.inline.svg b/src/modules/Homepage/images/nextflow.inline.svg deleted file mode 100644 index 95a83df98..000000000 --- a/src/modules/Homepage/images/nextflow.inline.svg +++ /dev/null @@ -1,16 +0,0 @@ - - - - - - - - - - - - - - - - diff --git a/src/modules/Homepage/images/platform2.inline.svg b/src/modules/Homepage/images/platform2.inline.svg deleted file mode 100644 index 14e0aa269..000000000 --- a/src/modules/Homepage/images/platform2.inline.svg +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file diff --git a/src/modules/Homepage/images/wave.inline.svg b/src/modules/Homepage/images/wave.inline.svg deleted file mode 100644 index 46ac25a9e..000000000 --- a/src/modules/Homepage/images/wave.inline.svg +++ /dev/null @@ -1,12 +0,0 @@ - - - - - - - - - - - - diff --git a/src/modules/Homepage/index.tsx b/src/modules/Homepage/index.tsx deleted file mode 100644 index 4a21ab1b0..000000000 --- a/src/modules/Homepage/index.tsx +++ /dev/null @@ -1,418 +0,0 @@ -import React, { useState } from "react"; -import Layout from "@theme/Layout"; -import clsx from "clsx"; - -import useMediaQuery from "../../theme/Navbar/Layout/SeqeraHeader/hooks/useMediaQuery"; -import Sidebar from "../../theme/DocSidebar/Desktop"; - -import styles from "./styles.module.css"; - -import Link from "@docusaurus/Link"; - -import CodeBlock from "@theme-original/CodeBlock"; - -import Fusion from "./images/fusion.inline.svg"; -import Nextflow from "./images/nextflow.inline.svg"; -import MultiQC from "./images/multiqc.inline.svg"; -import Platform from "./images/platform2.inline.svg"; -import Wave from "./images/wave.inline.svg"; - -import Card from "../../components/Card"; -import Grid from "../../components/Grid"; - -import Resources from "./Resources"; -import SearchBar from "@theme/SearchBar"; - -import { themes } from "prism-react-renderer"; -import Button from "../../components/Button"; - -const useCases = [ - { - title: "Basic pipeline", - code: ` -workflow { - FASTQC(read_pairs_ch) - MULTIQC(FASTQC.out.collect()) -}`, - }, - { - title: "Parallel execution", - code: ` -process SPLIT_SEQUENCES { - input: - path sequences - output: - path 'chunk_*' - - script: - """ - split -l 100 $sequences chunk_ - """ -} - -workflow { - Channel - .fromPath('data/*.fa') - .set { sequences } - - SPLIT_SEQUENCES(sequences) - SPLIT_SEQUENCES.out - .flatten() - .set { chunks } - - ALIGN(chunks) - MERGE(ALIGN.out.collect()) -}`, - }, - { - title: "Conditional execution", - code: ` -workflow { - if (params.with_fusion) { - FUSION(input_ch) - PROCESS(FUSION.out) - } else { - PROCESS(input_ch) - } -}`, - }, - { - title: "Cloud execution", - code: ` -process { - executor = 'awsbatch' - queue = 'my-batch-queue' - container = 'nextflow/rnaseq-nf:latest' -} - -aws { - region = 'eu-west-1' - batch { - cliPath = '/home/ec2-user/miniconda/bin/aws' - } -}`, - }, -]; - -export default function Home(): JSX.Element { - const isMobile = useMediaQuery("(max-width: 995px)"); - const disabled = true; - const [selectedUseCase, setSelectedUseCase] = useState(0); - - return ( - -
- {!isMobile && !disabled && ( -
- -
- )} -
-
-
-
-

- Documentation -

-

- Explore our guides, documentation, and examples to build with - Seqera. -

-
- -

- Recommended articles -

-
- {/* Do not remove below block, keeping as commented for now */} - - {/*
-
-

Try Nextflow

-
-
- {useCases.map((useCase, index) => ( - - ))} -
-
- {useCases[selectedUseCase].code} -
-
-
-
*/} - -
-
-
-

Platform

-
    -
  • - - Add pipelines - -
    • -
  • - - Monitor runs - -
    • -
  • - - Automation - -
    • -
-
-
-

Studios

-
    -
  • - - Studios overview - -
    • -
  • - - Enterprise deployment - -
    • -
  • - - Data Explorer - -
    • -
-
-
-

- Developer tools -

- -
-
-

MultiQC

-
    -
  • - - Get started - -
    • -
  • - - Run MultiQC - -
    • -
  • - Modules -
    • -
-
-
-
-
-

- Open source -

-
-
- - Nextflow -

- Nextflow -

- - - Wave -

- Wave -

- - - MultiQC -

- MultiQC -

- -
-
-
-
-

Platform

-
-
- -
-

- Seqera Cloud -

- - -
-

- Seqera Enterprise -

- - - Fusion -

- Fusion -

- -
-
-
-
-

Cloud

-
-
- -
-

- AWS -

- - -
-

- GCP -

- - -
-

- Azure -

- -
-
-
-
-
-

Help

-
-
- -
-

- Support Portal -

-

- Contact support for help with your Pro or Enterprise - account -

- - -
-

- Community forum -

-

- Discuss topics with other users -

- - -
-

- Service status -

-

- Check the status of Seqera services -

- -
-
-
-
-
-
-
- - ); -} diff --git a/src/modules/Homepage/styles.module.css b/src/modules/Homepage/styles.module.css deleted file mode 100644 index cbf02fba8..000000000 --- a/src/modules/Homepage/styles.module.css +++ /dev/null @@ -1,45 +0,0 @@ - -.page ul { - list-style: none; - padding-left: 0; -} - -.page p.typo-h4 { - margin-top: 0; -} - -a { - color: var(--color-blu); - &:hover { - color: var(--color-blu-700); - /* text-decoration: none; */ - } - &:active { - color: var(--color-blu-800); - } - &:disabled { - color: var(--color-blu-400); - } -} - -pre, -code { - max-height: 300px; - font-size: 90%; -} - -.page { - /* background-image: url("./images/home-1a.jpg"); - background-size: cover; */ -} -html[data-theme="light"] { - & .page { - /* background-image: url("./images/home-1a-light.jpg"); */ - } -} - - -html[data-theme="dark"] a { - color: white; -} - diff --git a/src/modules/readme.md b/src/modules/readme.md deleted file mode 100644 index a9d875e7a..000000000 --- a/src/modules/readme.md +++ /dev/null @@ -1 +0,0 @@ -Modules are single-use components (i.e. pages) diff --git a/src/pages/api.tsx b/src/pages/api.tsx deleted file mode 100644 index b8c9b6fe7..000000000 --- a/src/pages/api.tsx +++ /dev/null @@ -1,6 +0,0 @@ -import React from "react"; -import { Redirect } from "react-router-dom"; - -export default function WaveRedirect(): JSX.Element { - return ; -} diff --git a/src/pages/faq.tsx b/src/pages/faq.tsx deleted file mode 100644 index eb767f5ad..000000000 --- a/src/pages/faq.tsx +++ /dev/null @@ -1,6 +0,0 @@ -import React from "react"; -import { Redirect } from "react-router-dom"; - -export default function WaveRedirect(): JSX.Element { - return ; -} diff --git a/src/pages/guide.tsx b/src/pages/guide.tsx deleted file mode 100644 index 26b6bdb80..000000000 --- a/src/pages/guide.tsx +++ /dev/null @@ -1,6 +0,0 @@ -import React from "react"; -import { Redirect } from "react-router-dom"; - -export default function WaveRedirect(): JSX.Element { - return ; -} diff --git a/src/pages/index.tsx b/src/pages/index.tsx deleted file mode 100644 index 8762e045d..000000000 --- a/src/pages/index.tsx +++ /dev/null @@ -1,2 +0,0 @@ -import Homepage from "../modules/Homepage"; -export default Homepage; diff --git a/src/pages/nextflow.tsx b/src/pages/nextflow.tsx deleted file mode 100644 index 22b16ff9b..000000000 --- a/src/pages/nextflow.tsx +++ /dev/null @@ -1,8 +0,0 @@ -import React from 'react'; - -export default function RedirectPage() { - React.useEffect(() => { - window.location.href = "https://www.nextflow.io/docs/latest"; - }, []); - return null; -} diff --git a/src/theme/BlogLayout/index.js b/src/theme/BlogLayout/index.js deleted file mode 100644 index 1ba69fb64..000000000 --- a/src/theme/BlogLayout/index.js +++ /dev/null @@ -1,32 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import Layout from '@theme/Layout'; -import BlogSidebar from '@theme/BlogSidebar'; - -import styles from './styles.module.css'; - - -export default function BlogLayout(props) { - const {sidebar, toc, children, ...layoutProps} = props; - return ( - -
- -
-
-
-
- {children} -
- {toc && ( -
- {toc} -
- )} -
-
-
-
- - ); -} diff --git a/src/theme/BlogLayout/styles.module.css b/src/theme/BlogLayout/styles.module.css deleted file mode 100644 index 8ccb8a23c..000000000 --- a/src/theme/BlogLayout/styles.module.css +++ /dev/null @@ -1,85 +0,0 @@ -@media (min-width: 996px) { - .blogWrapper { - display: flex; - width: 100%; - } -} - -.blogMain { - flex-grow: 1; - flex-wrap: nowrap; - max-width: 100%; - @media (min-width: 996px) { - max-width: calc(100% - var(--doc-sidebar-width)); - } -} - -.toc { - display: none; - @media (min-width: 996px) { - display: flex; - } -} - -@media (min-width: 996px) { - .blogBody { - display: flex; - flex-wrap: nowrap; - } - .blogContent { - max-width: 75%; - } -} - -/* Shrink headings in blog content on both list and tag pages */ -:global(.blog-list-page) .blogContent, -:global(.blog-tag-page) .blogContent { - /* Keep list titles at their original size */ - & :global(.blogPostItem) > :global(.blogPostItemHeader) > :global(.blogPostItemTitle) { - font-size: 2rem !important; - } - - /* Shrink other headings */ - & h1:not(:global(.blogPostItemTitle)) { - font-size: 2rem; - font-weight: 600; - margin-top: 2rem; - margin-bottom: 1rem; - line-height: 1.1; - } - - & h2:not(:global(.blogPostItemTitle)) { - font-size: 1.75rem; - font-weight: 600; - line-height: 1; - margin-top: 2rem; - margin-bottom: 1rem; - } - - & h3:not(:global(.blogPostItemTitle)) { - font-size: 1.5rem; - font-weight: 600; - margin-top: 2rem; - margin-bottom: 1rem; - line-height: 1.2; - } - - & h4:not(:global(.blogPostItemTitle)) { - font-size: 1.25rem; - font-weight: 600; - margin-top: 1.5rem; - margin-bottom: .45rem; - } - - & h5:not(:global(.blogPostItemTitle)) { - font-size: 1.1rem; - font-weight: 600; - margin: 0.5rem 0; - } - - & h6:not(:global(.blogPostItemTitle)) { - font-size: 1rem; - font-weight: 600; - margin: 0.25rem 0; - } -} diff --git a/src/theme/BlogPostItem/Footer/ReadMoreLink/index.js b/src/theme/BlogPostItem/Footer/ReadMoreLink/index.js deleted file mode 100644 index c2495758c..000000000 --- a/src/theme/BlogPostItem/Footer/ReadMoreLink/index.js +++ /dev/null @@ -1,32 +0,0 @@ -import React from 'react'; -import Translate, {translate} from '@docusaurus/Translate'; -import Link from '@docusaurus/Link'; -function ReadMoreLabel() { - return ( - - - Read more - - - ); -} -export default function BlogPostItemFooterReadMoreLink(props) { - const {blogPostTitle, ...linkProps} = props; - return ( - - - - ); -} diff --git a/src/theme/BlogPostItem/Footer/index.js b/src/theme/BlogPostItem/Footer/index.js deleted file mode 100644 index b9afb9eaa..000000000 --- a/src/theme/BlogPostItem/Footer/index.js +++ /dev/null @@ -1,54 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import {useBlogPost} from '@docusaurus/plugin-content-blog/client'; -import {ThemeClassNames} from '@docusaurus/theme-common'; -import EditMetaRow from '@theme/EditMetaRow'; -import TagsListInline from '@theme/TagsListInline'; -import ReadMoreLink from '@theme/BlogPostItem/Footer/ReadMoreLink'; - -import styles from './styles.module.css'; - -export default function BlogPostItemFooter() { - const {metadata, isBlogPostPage} = useBlogPost(); - const { - title, - editUrl, - hasTruncateMarker, - lastUpdatedBy, - lastUpdatedAt, - } = metadata; - // A post is truncated if it's in the "list view" and it has a truncate marker - const truncatedPost = !isBlogPostPage && hasTruncateMarker; - // BlogPost footer - details view - if (isBlogPostPage) { - const canDisplayEditMetaRow = !!(editUrl || lastUpdatedAt || lastUpdatedBy); - return ( -
- {canDisplayEditMetaRow && ( - - )} -
- ); - } - // BlogPost footer - list view - else { - return ( -
- {truncatedPost && ( -
- -
- )} -
- ); - } -} diff --git a/src/theme/BlogPostItem/Footer/styles.module.css b/src/theme/BlogPostItem/Footer/styles.module.css deleted file mode 100644 index 3952bdfe5..000000000 --- a/src/theme/BlogPostItem/Footer/styles.module.css +++ /dev/null @@ -1,8 +0,0 @@ -.blogFooter { - margin-top: 1rem; - border-bottom: 1px solid rgba(100, 100, 100, 0.2); -} -.readMore { - padding-bottom: 1rem; - color: var(--brand-color); -} diff --git a/src/theme/BlogPostItem/Header/Info/index.js b/src/theme/BlogPostItem/Header/Info/index.js deleted file mode 100644 index 0f50c0309..000000000 --- a/src/theme/BlogPostItem/Header/Info/index.js +++ /dev/null @@ -1,39 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import {useDateTimeFormat} from '@docusaurus/theme-common/internal'; -import {useBlogPost} from '@docusaurus/plugin-content-blog/client'; -import Link from '@docusaurus/Link'; - -import styles from './styles.module.css'; - -function DateTime({date, formattedDate}) { - return ; -} -function capitalize(str) { - return str.replace(/\b\w/g, function(char) { return char.toUpperCase(); }); -} -export default function BlogPostItemHeaderInfo({className}) { - const {metadata} = useBlogPost(); - const {date, tags} = metadata; - const dateTimeFormat = useDateTimeFormat({ - day: 'numeric', - month: 'long', - year: 'numeric', - timeZone: 'UTC', - }); - const tagsExists = tags.length > 0; - const formatDate = (blogDate) => dateTimeFormat.format(new Date(blogDate)); - tags.forEach(function(tag) { - tag.title = tag.label.toLowerCase() === 'multiqc' ? 'MultiQC' : capitalize(tag.label); - }); - return ( -
- - {tagsExists && tags.map((tag) => ( -
- {tag.title} -
- ))} -
- ); -} diff --git a/src/theme/BlogPostItem/Header/Info/styles.module.css b/src/theme/BlogPostItem/Header/Info/styles.module.css deleted file mode 100644 index 980652ce0..000000000 --- a/src/theme/BlogPostItem/Header/Info/styles.module.css +++ /dev/null @@ -1,70 +0,0 @@ -.container { - font-size: 0.9rem; - display: flex; - align-items: center; - gap: 1em; - margin-bottom: 1rem; -} - -.tag { - border-radius: 8px; - border: 1px solid var(--color-brand-400); - padding: 0.1em 0.5em; - background-color: var(--color-brand-200); - & a { - color: var(--color-brand-900); - } -} -.fusion { - background-color: var(--color-fusion-100); - & a { - color: var(--color-fusion-800); - } -} -.nextflow { - background-color: var(--color-nextflow-100); - & a { - color: var(--color-nextflow-800); - } -} -.multiqc { - background-color: var(--color-multiqc-100); - & a { - color: var(--color-multiqc-800); - } -} -.wave { - background-color: var(--color-wave-100); - & a { - color: var(--color-wave-800); - } -} -[data-theme="dark"] { - .tag { - border: 1px solid var(--color-brand-700); - background-color: var(--color-brand-1000); - & a { - color: var(--color-brand-300); - } - } - .fusion { - & a { - color: var(--color-fusion-400); - } - } - .nextflow { - & a { - color: var(--color-nextflow-200); - } - } - .multiqc { - & a { - color: var(--color-multiqc-200); - } - } - .wave { - & a { - color: var(--color-wave-200); - } - } -} diff --git a/src/theme/BlogPostItem/Header/Title/index.js b/src/theme/BlogPostItem/Header/Title/index.js deleted file mode 100644 index 7ada70bf2..000000000 --- a/src/theme/BlogPostItem/Header/Title/index.js +++ /dev/null @@ -1,22 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import Link from '@docusaurus/Link'; -import {useBlogPost} from '@docusaurus/plugin-content-blog/client'; -import styles from './styles.module.css'; - -export default function BlogPostItemHeaderTitle({className}) { - const {metadata, isBlogPostPage} = useBlogPost(); - const {permalink, title} = metadata; - const TitleHeading = isBlogPostPage ? 'h1' : 'h2'; - return ( - - {isBlogPostPage ? title : {title}} - - ); -} diff --git a/src/theme/BlogPostItem/Header/Title/styles.module.css b/src/theme/BlogPostItem/Header/Title/styles.module.css deleted file mode 100644 index 213b84c9c..000000000 --- a/src/theme/BlogPostItem/Header/Title/styles.module.css +++ /dev/null @@ -1,24 +0,0 @@ -.blogPostPageTitle { - font-size: 3rem; -} - -.listTitle { - font-size: 2rem; -} - -.blogTitleLink { - color: var(--text-color); - text-decoration: none; - &:hover { - text-decoration: none; - } -} - -/** - Blog post title should be smaller on smaller devices -**/ -@media (max-width: 576px) { - .title { - font-size: 2rem; - } -} diff --git a/src/theme/BlogPostItems/index.js b/src/theme/BlogPostItems/index.js deleted file mode 100644 index b5bd0a658..000000000 --- a/src/theme/BlogPostItems/index.js +++ /dev/null @@ -1,14 +0,0 @@ -import React from 'react'; -import BlogPostItems from '@theme-original/BlogPostItems'; - -import Heading from '@theme/Heading' - -export default function BlogPostItemsWrapper(props) { - const {isTagPage} = props; - return ( - <> - {!isTagPage && Changelog } - - - ); -} diff --git a/src/theme/BlogSidebar/Desktop/index.js b/src/theme/BlogSidebar/Desktop/index.js deleted file mode 100644 index 92b40f483..000000000 --- a/src/theme/BlogSidebar/Desktop/index.js +++ /dev/null @@ -1,77 +0,0 @@ -import React, {memo} from 'react'; -import clsx from 'clsx'; -import {translate} from '@docusaurus/Translate'; -import { useLocation } from '@docusaurus/router'; -import { - useVisibleBlogSidebarItems, - BlogSidebarItemList, -} from '@docusaurus/plugin-content-blog/client'; -import BlogSidebarContent from '@theme/BlogSidebar/Content'; -// import SearchBar from "@theme-original/SearchBar"; -import Link from '@docusaurus/Link'; - -import RssIcon from "./rss.svg"; -import styles from './styles.module.css'; - - -const ListComponent = ({items}) => { - return ( - - ); -}; -function BlogSidebarDesktop({sidebar}) { - const items = useVisibleBlogSidebarItems(sidebar.items); - - // Figure out if we're looking at a product tag or changelog entry - const location = useLocation(); - const pathMatch = location.pathname.match(/\/changelog\/(?:tags\/)?([^\/]+)(?:\/v[\d.]+.*)?/); - const product = pathMatch ? pathMatch[1] : null; - - // Map product names to their correct documentation paths - const getProductPath = (product) => { - if (!product || product === 'tags' || product === 'page') return '/'; - const mapping = { - 'seqera-cloud': '/platform-cloud', - 'seqera-enterprise': '/platform-enterprise' - }; - return mapping[product] || `/${product}`; - }; - - // Filter the sidebar for just this product - const filteredItems = product ? items.filter(item => item.permalink.includes(`/changelog/${product}/`)) : items; - - return ( - - ); -} -export default memo(BlogSidebarDesktop); diff --git a/src/theme/BlogSidebar/Desktop/rss.svg b/src/theme/BlogSidebar/Desktop/rss.svg deleted file mode 100644 index 8de6d2f75..000000000 --- a/src/theme/BlogSidebar/Desktop/rss.svg +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/theme/BlogSidebar/Desktop/styles.module.css b/src/theme/BlogSidebar/Desktop/styles.module.css deleted file mode 100644 index f6f41c9a2..000000000 --- a/src/theme/BlogSidebar/Desktop/styles.module.css +++ /dev/null @@ -1,122 +0,0 @@ -.blogAside { - width: var(--doc-sidebar-width); - padding: 30px; -} -[data-theme="light"] .blogAside { - background: rgb(249, 249, 249); -} -[data-theme="dark"] .blogAside { - background: rgb(27, 24, 35); -} - -.sidebar { - max-height: calc(100vh - (var(--ifm-navbar-height) + 2rem)); - overflow-y: auto; - position: sticky; - top: calc(var(--ifm-navbar-height) + 2rem); - margin-top: 0; -} - -.theme-doc-desktop { - --ifm-navbar-height: 8rem; -} - -.sidebarItemTitle { - font-size: 1em; - font-weight: 600; - margin: 8px 0; - height: 34px; - padding: 0 12px; - width: 100%; - font-family: Inter, sans-serif; - background-color: white; - border-radius: 9px; - border: 1px solid var(--color-brand-300); - display: flex; - justify-content: space-between; - align-items: center; - & a { - color: var(--color-brand-1000); - text-decoration: none; - &:hover { - color: var(--ifm-link-hover-color); - } - } - & .RssIconLink { - display: inline-block; - height: 24px; - & svg { - color: var(--color-multiqc-600); - width: 24px; - height: 24px; - } - } -} -/* Dark theme */ - -[data-theme="dark"] .sidebarItemTitle { - border-color: var(--color-brand-800); - background-color: var(--color-brand-1400); - & a { - color: #fff; - &:hover { - color: var(--ifm-link-hover-color); - } - } -} - -.backToDocs { - font-size: 0.9rem; - color: var(--color-brand-600); - margin-left: 0.5em; -} -[data-theme="dark"] .backToDocs { - color: var(--color-brand-400); -} - -.sidebarItemLink { - border-radius: 5px; - font-weight: 400; - font-size: 0.9rem; - display: block; - line-height: 1.25; - padding: var(--ifm-menu-link-padding-vertical) - var(--ifm-menu-link-padding-horizontal); -} -[data-theme="light"] .blogAside { - .sidebarItemLink { - color: #000; - } - .sidebarItemLinkActive { - background: #e8ebfc; - color: #4256e7; - } -} -[data-theme="dark"] .blogAside { - .sidebarItemLink { - color: rgba(255, 255, 255, 0.9); - } - .sidebarItemLinkActive { - background: rgba(0, 0, 0, 0.2); - color: #98a3ff; - } -} - -.sidebarItem { - margin-top: 0.25rem; -} - -.sidebarItemLink:hover { - text-decoration: none; - background: var(--ifm-menu-color-background-hover); -} - -@media (max-width: 995px) { - .sidebar { - display: none; - } -} - -.yearGroupHeading { - margin: 1.6rem 0 0.4rem 0.7rem; -} diff --git a/src/theme/BlogTagsPostsPage/index.js b/src/theme/BlogTagsPostsPage/index.js deleted file mode 100644 index c4c6db599..000000000 --- a/src/theme/BlogTagsPostsPage/index.js +++ /dev/null @@ -1,56 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import Translate from '@docusaurus/Translate'; -import { - PageMetadata, - HtmlClassNameProvider, - ThemeClassNames, -} from '@docusaurus/theme-common'; -import {useBlogTagsPostsPageTitle} from '@docusaurus/theme-common/internal'; -import Link from '@docusaurus/Link'; -import BlogLayout from '@theme/BlogLayout'; -import BlogListPaginator from '@theme/BlogListPaginator'; -import SearchMetadata from '@theme/SearchMetadata'; -import BlogPostItems from '@theme/BlogPostItems'; -import Unlisted from '@theme/ContentVisibility/Unlisted'; -import Heading from '@theme/Heading'; - -function BlogTagsPostsPageMetadata({tag}) { - const title = useBlogTagsPostsPageTitle(tag); - return ( - <> - - - - ); -} - -function BlogTagsPostsPageContent({tag, items, sidebar, listMetadata}) { - let title = tag.label.replace(/\b\w/g, function(char) { return char.toUpperCase(); }); - if(title == 'Multiqc') title = 'MultiQC'; - return ( - - {tag.unlisted && } -
- Changelog: {title} - {tag.description &&

{tag.description}

} -
- - - - ); -} - -export default function BlogTagsPostsPage(props) { - return ( - - - - - ); -} diff --git a/src/theme/ColorModeToggle/index.js b/src/theme/ColorModeToggle/index.js deleted file mode 100644 index eb4281a4c..000000000 --- a/src/theme/ColorModeToggle/index.js +++ /dev/null @@ -1,56 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import useIsBrowser from '@docusaurus/useIsBrowser'; -import {translate} from '@docusaurus/Translate'; -import IconLightMode from '@theme/Icon/LightMode'; -import IconDarkMode from '@theme/Icon/DarkMode'; -import styles from './styles.module.css'; -function ColorModeToggle({className, buttonClassName, value, onChange}) { - const isBrowser = useIsBrowser(); - const title = translate( - { - message: 'Switch between dark and light mode (currently {mode})', - id: 'theme.colorToggle.ariaLabel', - description: 'The ARIA label for the navbar color mode toggle', - }, - { - mode: - value === 'dark' - ? translate({ - message: 'dark mode', - id: 'theme.colorToggle.ariaLabel.mode.dark', - description: 'The name for the dark color mode', - }) - : translate({ - message: 'light mode', - id: 'theme.colorToggle.ariaLabel.mode.light', - description: 'The name for the light color mode', - }), - }, - ); - return ( -
- -
- ); -} -export default React.memo(ColorModeToggle); diff --git a/src/theme/ColorModeToggle/styles.module.css b/src/theme/ColorModeToggle/styles.module.css deleted file mode 100644 index 5ddfebc06..000000000 --- a/src/theme/ColorModeToggle/styles.module.css +++ /dev/null @@ -1,29 +0,0 @@ -.toggle { - width: 2rem; - height: 2rem; -} - -.toggleButton { - -webkit-tap-highlight-color: transparent; - align-items: center; - display: flex; - justify-content: center; - width: 100%; - height: 100%; - border-radius: 50%; - transition: background var(--ifm-transition-fast); -} - -.toggleButton:hover { - opacity: .8; - transition: all .25s; -} - -[data-theme="light"] .darkToggleIcon, -[data-theme="dark"] .lightToggleIcon { - display: none; -} - -.toggleButtonDisabled { - cursor: not-allowed; -} diff --git a/src/theme/DocBreadcrumbs/Items/Home/index.js b/src/theme/DocBreadcrumbs/Items/Home/index.js deleted file mode 100644 index 38e0da966..000000000 --- a/src/theme/DocBreadcrumbs/Items/Home/index.js +++ /dev/null @@ -1,32 +0,0 @@ -import React from 'react'; -import { useLocation } from '@docusaurus/router'; -import Home from '@theme-original/DocBreadcrumbs/Items/Home'; - -export default function HomeWrapper(props) { - - const location = useLocation(); - - const getCurrentProduct = () => { - if (location.pathname.startsWith("/fusion")) return "Fusion"; - if (location.pathname.startsWith("/nextflow")) return "Nextflow"; - if (location.pathname.startsWith("/multiqc")) return "MultiQC"; - if (location.pathname.startsWith("/platform-enterprise")) return "Platform Enterprise"; - if (location.pathname.startsWith("/platform-cloud")) return "Platform Cloud"; - if (location.pathname.startsWith("/platform-api")) return "Platform API"; - if (location.pathname.startsWith("/wave")) return "Wave"; - return null; - }; - - const currentProduct = getCurrentProduct(); - - return ( - <> - -
  • - - {currentProduct} - -
    • - - ); -} diff --git a/src/theme/DocBreadcrumbs/Items/Home/index.tsx b/src/theme/DocBreadcrumbs/Items/Home/index.tsx deleted file mode 100644 index a3995cdb1..000000000 --- a/src/theme/DocBreadcrumbs/Items/Home/index.tsx +++ /dev/null @@ -1,27 +0,0 @@ -import React, {type ReactNode} from 'react'; -import Link from '@docusaurus/Link'; -import useBaseUrl from '@docusaurus/useBaseUrl'; -import {translate} from '@docusaurus/Translate'; -import IconHome from '@theme/Icon/Home'; - -import styles from './styles.module.css'; - -export default function HomeBreadcrumbItem(): ReactNode { - const homeHref = useBaseUrl('/'); - - return ( -
  • - {/* todo: change to relative path once single build with API */} - - - -
    • - ); -} diff --git a/src/theme/DocBreadcrumbs/Items/Home/styles.module.css b/src/theme/DocBreadcrumbs/Items/Home/styles.module.css deleted file mode 100644 index 533d76487..000000000 --- a/src/theme/DocBreadcrumbs/Items/Home/styles.module.css +++ /dev/null @@ -1,7 +0,0 @@ -.breadcrumbHomeIcon { - position: relative; - top: 1px; - vertical-align: top; - height: 1.1rem; - width: 1.1rem; -} diff --git a/src/theme/DocBreadcrumbs/index.tsx b/src/theme/DocBreadcrumbs/index.tsx deleted file mode 100644 index b8ba3273c..000000000 --- a/src/theme/DocBreadcrumbs/index.tsx +++ /dev/null @@ -1,117 +0,0 @@ -import React, {type ReactNode} from 'react'; -import clsx from 'clsx'; -import {ThemeClassNames} from '@docusaurus/theme-common'; -import {useSidebarBreadcrumbs} from '@docusaurus/plugin-content-docs/client'; -import {useHomePageRoute} from '@docusaurus/theme-common/internal'; -import Link from '@docusaurus/Link'; -import {translate} from '@docusaurus/Translate'; -import HomeBreadcrumbItem from '@theme/DocBreadcrumbs/Items/Home'; - -import styles from './styles.module.css'; - -// TODO move to design system folder -function BreadcrumbsItemLink({ - children, - href, - isLast, -}: { - children: ReactNode; - href: string | undefined; - isLast: boolean; -}): ReactNode { - const className = 'breadcrumbs__link'; - if (isLast) { - return ( - - {children} - - ); - } - return href ? ( - - {children} - - ) : ( - // TODO Google search console doesn't like breadcrumb items without href. - // The schema doesn't seem to require `id` for each `item`, although Google - // insist to infer one, even if it's invalid. Removing `itemProp="item - // name"` for now, since I don't know how to properly fix it. - // See https://github.com/facebook/docusaurus/issues/7241 - {children} - ); -} - -// TODO move to design system folder -function BreadcrumbsItem({ - children, - active, - index, - addMicrodata, -}: { - children: ReactNode; - active?: boolean; - index: number; - addMicrodata: boolean; -}): ReactNode { - return ( -
  • - {children} - -
    • - ); -} - -export default function DocBreadcrumbs(): ReactNode { - const breadcrumbs = useSidebarBreadcrumbs(); - const homePageRoute = useHomePageRoute(); - - if (!breadcrumbs) { - return null; - } - - return ( - - ); -} diff --git a/src/theme/DocBreadcrumbs/styles.module.css b/src/theme/DocBreadcrumbs/styles.module.css deleted file mode 100644 index 72da4671a..000000000 --- a/src/theme/DocBreadcrumbs/styles.module.css +++ /dev/null @@ -1,4 +0,0 @@ -.breadcrumbsContainer { - --ifm-breadcrumb-size-multiplier: 0.8; - margin-bottom: 0.8rem; -} diff --git a/src/theme/DocItem/Metadata/getShareImage.ts b/src/theme/DocItem/Metadata/getShareImage.ts deleted file mode 100644 index fe836645c..000000000 --- a/src/theme/DocItem/Metadata/getShareImage.ts +++ /dev/null @@ -1,28 +0,0 @@ -function getShareImage(item) { - const host = "https://docs.seqera.io"; - const path = "og-generate.png"; - - let title = item.title; - const wordCount = title.split(" ").length; - if (wordCount === 1) { - let source = item.sourceDirName; - if (source === "cli") source = "CLI"; - if (source === "api") source = "API"; - title = `${title} (${source})`; - } - - const info = { - title, - subTitle: item.description, - }; - - let queryString = ""; - for (const key in info) { - if (queryString) queryString += "&"; - queryString += key + "=" + encodeURIComponent(info[key]); - } - - return `${host}/${path}?${queryString}`; -} - -export default getShareImage; diff --git a/src/theme/DocItem/Metadata/index.tsx b/src/theme/DocItem/Metadata/index.tsx deleted file mode 100644 index ea69c8f42..000000000 --- a/src/theme/DocItem/Metadata/index.tsx +++ /dev/null @@ -1,19 +0,0 @@ -import React from "react"; -import { PageMetadata } from "@docusaurus/theme-common"; -import { useDoc } from "@docusaurus/plugin-content-docs/client"; -import getShareImage from "./getShareImage"; - -export default function DocItemMetadata(): JSX.Element { - const { metadata, frontMatter, assets } = useDoc(); - const image = getShareImage(metadata); - return ( - <> - - - ); -} diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/LinkOut.inline.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/LinkOut.inline.svg deleted file mode 100644 index 8daf08de5..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/LinkOut.inline.svg +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/index.jsx b/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/index.jsx deleted file mode 100644 index 742ac9154..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/index.jsx +++ /dev/null @@ -1,81 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import { useLocation } from "@docusaurus/router"; -import styles from "./styles.module.css"; - -import Fusion from "../images/fusion.svg"; -import Nextflow from "../images/nextflow.svg"; -import MultiQC from "../images/multiqc.svg"; -import Cloud from "../images/platform-cloud.svg"; -import Enterprise from "../images/platform-enterprise.svg"; -import Wave from "../images/wave.svg"; - -import FusionDark from "../images/fusion.dark.svg"; -import NextflowDark from "../images/nextflow.dark.svg"; -import MultiQCDark from "../images/multiqc.dark.svg"; -import CloudDark from "../images/platform-cloud.dark.svg"; -import EnterpriseDark from "../images/platform-enterprise.dark.svg"; -import WaveDark from "../images/wave.dark.svg"; - -const ProductSwitcher = ({ product }) => { - const location = useLocation(); - if (product === undefined) { - if (location.pathname.startsWith("/fusion")) { - product = "Fusion"; - } - if (location.pathname.startsWith("/nextflow")) { - product = "Nextflow"; - } - if (location.pathname.startsWith("/multiqc")) { - product = "MultiQC"; - } - if (location.pathname.startsWith("/platform-cloud")) { - product = "Platform Cloud"; - } - if (location.pathname.startsWith("/platform-enterprise")) { - product = "Platform Enterprise"; - } - if (location.pathname.startsWith("/wave")) { - product = "Wave"; - } - } - - const logos = { - "Platform Enterprise": { - light: Enterprise, - dark: EnterpriseDark, - }, - "Platform Cloud": { - light: Cloud, - dark: CloudDark, - }, - Nextflow: { - light: Nextflow, - dark: NextflowDark, - }, - MultiQC: { - light: MultiQC, - dark: MultiQCDark, - }, - Wave: { - light: Wave, - dark: WaveDark, - }, - Fusion: { - light: Fusion, - dark: FusionDark, - }, - }; - - const Logo = logos[product]?.light; - const LogoDark = logos[product]?.dark; - - return ( - - {Logo && } - {LogoDark && } - - ); -}; - -export default ProductSwitcher; diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/styles.module.css b/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/styles.module.css deleted file mode 100644 index b08816455..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/ProductLogo/styles.module.css +++ /dev/null @@ -1,14 +0,0 @@ -[data-theme="dark"] .themeLight, -[data-theme="light"] .themeDark { - display: none; -} - -.logo { - max-width: 178px; - display: flex; - align-items: center; - flex: none; - & svg { - height: 15px; - } -} diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/VersionSwitcher.tsx b/src/theme/DocSidebar/Desktop/ProductSwitcher/VersionSwitcher.tsx deleted file mode 100644 index 82c608c44..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/VersionSwitcher.tsx +++ /dev/null @@ -1,99 +0,0 @@ -import React, { useState, useRef, useEffect } from "react"; -import { - useVersions, - useDocsVersion, - useDocsPreferredVersion, -} from "@docusaurus/plugin-content-docs/client"; -import { useLocation } from "@docusaurus/router"; -import Link from "@docusaurus/Link"; - -import styles from "./styles.module.css"; -import clsx from "clsx"; - -const VersionSwitcher = ({ isOpen, setIsOpen }) => { - const dropdownRef = useRef(null); - const location = useLocation(); - const { preferredVersion, savePreferredVersionName } = - useDocsPreferredVersion("platform-enterprise"); - const versions = useVersions("platform-enterprise"); - const currentVersion = useDocsVersion(); - - useEffect(() => { - const handleClickOutside = (event) => { - if (dropdownRef.current?.contains(event.target)) return; - setTimeout(() => setIsOpen(false), 100); - }; - - document.addEventListener("mousedown", handleClickOutside); - return () => { - document.removeEventListener("mousedown", handleClickOutside); - }; - }, []); - - const toggleDropdown = () => setIsOpen((prev) => !prev); - - function handleSelectVersion(version) { - savePreferredVersionName(version); - } - - if (typeof window === "undefined") return null; - if (!versions) return null; - if (!location.pathname.startsWith("/platform-enterprise")) return null; - - const items = versions.filter( - (version) => version.label !== currentVersion?.label, - ); - - let urlSuffix = ""; - - if ( - currentVersion && - location.pathname.startsWith(`/platform-enterprise/${currentVersion.label}`) - ) { - const currentVersionPrefix = `/platform-enterprise/${currentVersion.label}`; - urlSuffix = location.pathname.replace(currentVersionPrefix, ""); - } - - return ( -
    - - {isOpen && ( -
    - {items?.map((version) => ( -
    handleSelectVersion(version.name)} - > - - v{version.label}{" "} - {version.label === versions[0].label ? " (current)" : ""} - -
    - ))} -
    - )} -
    - ); -}; - -export default VersionSwitcher; diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/caret.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/caret.svg deleted file mode 100644 index a7e8084e8..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/caret.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.dark.svg deleted file mode 100644 index 7b1ff8fb6..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.dark.svg +++ /dev/null @@ -1,19 +0,0 @@ - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.svg deleted file mode 100644 index 6a7360371..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/fusion.svg +++ /dev/null @@ -1,20 +0,0 @@ - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.dark.svg deleted file mode 100644 index 42b19c089..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.dark.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.svg deleted file mode 100644 index cdb1c6f76..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/multiqc.svg +++ /dev/null @@ -1 +0,0 @@ - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.dark.svg deleted file mode 100644 index f58760ec9..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.dark.svg +++ /dev/null @@ -1,22 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.svg deleted file mode 100644 index 2d8c6c9b2..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/nextflow.svg +++ /dev/null @@ -1,22 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.dark.svg deleted file mode 100644 index c13300726..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.dark.svg +++ /dev/null @@ -1,24 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.svg deleted file mode 100644 index 6cf9dafcd..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-cloud.svg +++ /dev/null @@ -1,29 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.dark.svg deleted file mode 100644 index 3d722c449..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.dark.svg +++ /dev/null @@ -1,29 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.svg deleted file mode 100644 index 1be6b14e3..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform-enterprise.svg +++ /dev/null @@ -1,29 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.dark.svg deleted file mode 100644 index 3e0f6ca2f..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.dark.svg +++ /dev/null @@ -1,36 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.svg deleted file mode 100644 index 5da0a6a24..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/platform.svg +++ /dev/null @@ -1,36 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.dark.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.dark.svg deleted file mode 100644 index e59e08665..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.dark.svg +++ /dev/null @@ -1,23 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.svg b/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.svg deleted file mode 100644 index 5f74b87db..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/images/wave.svg +++ /dev/null @@ -1,23 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx b/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx deleted file mode 100644 index 28008d1ce..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/index.jsx +++ /dev/null @@ -1,129 +0,0 @@ -import React, { useState, useRef, useEffect } from "react"; -import clsx from "clsx"; -import { useLocation } from "@docusaurus/router"; -import Link from "@docusaurus/Link"; - -import ProductLogo from "./ProductLogo"; -import LinkOut from "./LinkOut.inline.svg"; - -import styles from "./styles.module.css"; -import VersionSwitcher from "./VersionSwitcher"; - -const products = [ - { - name: "Platform Cloud", - url: "/platform-cloud", - }, - { - name: "Platform Enterprise", - url: "/platform-enterprise", - }, - { - name: "Nextflow", - url: "https://www.nextflow.io/docs/latest/", - }, - { name: "MultiQC", url: "/multiqc" }, - { name: "Wave", url: "/wave" }, - { name: "Fusion", url: "/fusion" }, -]; - -const ProductSwitcher = ({ isDropdown }) => { - const [isOpen, setIsOpen] = useState(false); - const [isEnterprisePage, setEnterprisePage] = useState(false); - const [isSecondaryOpen, setIsSecondaryOpen] = useState(false); - const dropdownRef = useRef(null); - const location = useLocation(); - - useEffect(() => { - const handleClickOutside = (event) => { - const ref = dropdownRef.current; - if (!ref?.contains(event.target)) { - setTimeout(() => setIsOpen(false), 100); - } - }; - - document.addEventListener("mousedown", handleClickOutside); - return () => { - document.removeEventListener("mousedown", handleClickOutside); - }; - }, []); - - const toggleDropdown = () => setIsOpen(!isOpen); - - const getCurrentProduct = () => { - if (location.pathname.startsWith("/fusion")) return "Fusion"; - if (location.pathname.startsWith("/nextflow")) return "Nextflow"; - if (location.pathname.startsWith("/multiqc")) return "MultiQC"; - if (location.pathname.startsWith("/platform-cloud")) - return "Platform Cloud"; - if (location.pathname.startsWith("/platform-enterprise")) - return "Platform Enterprise"; - if (location.pathname.startsWith("/wave")) return "Wave"; - return null; - }; - - useEffect(() => { - if (location.pathname.startsWith('/platform-enterprise')) { - setEnterprisePage(true); - } else { - setEnterprisePage(false); - } - }, [location.pathname]); - - const currentProduct = getCurrentProduct(); - - let items = products.filter((product) => product.name !== currentProduct); - if (!isDropdown) items = products; - - return ( -
    - {isDropdown && ( -
    -
    - {/* */} - -
    -
    - )} -
    - {items.map((product) => ( - - - {product.name === "Nextflow" && } - - ))} -
    -
    - ); -}; - -export default ProductSwitcher; diff --git a/src/theme/DocSidebar/Desktop/ProductSwitcher/styles.module.css b/src/theme/DocSidebar/Desktop/ProductSwitcher/styles.module.css deleted file mode 100644 index 576ae121f..000000000 --- a/src/theme/DocSidebar/Desktop/ProductSwitcher/styles.module.css +++ /dev/null @@ -1,163 +0,0 @@ -.switcher { - position: relative; - /* margin: 8px 0 0 0; */ - .button { - /* border-bottom-color: var(--color-brand-200); */ - z-index: 10; - &:after { - background: url('data:image/svg+xml;utf8,') - 50% / 24px 24px; - content: ""; - margin-left: auto; - min-width: 1.25rem; - height: 100%; - transform: rotate(180deg); - width: 1.25rem; - transition: transform var(--ifm-transition-fast) linear; - transform: rotate(-90deg); - } - } -} - -.items { - background-color: white; - border-radius: 9px; - border: 1px solid var(--color-brand-300); - overflow: hidden; - &.active { - border-bottom-left-radius: 0px; - border-bottom-right-radius: 0px; - & .button { - border-bottom-left-radius: 0px; - border-bottom-right-radius: 0px; - &:after { - transform: rotate(0); - } - } - } -} -.switcherPadding { - padding-top: 0.5rem; - padding-left: 1rem; - padding-right: 1rem; - margin-bottom: 0.75rem; -} - -.hidden { - display: none; -} - -.item { - height: 35px; - line-height: 35px; - text-decoration: none; - width: 100%; - transition: background 100ms; - color: var(--color-gray-1000); - border-bottom: 1px solid var(--color-brand-200); - display: flex; - align-items: center; - justify-content: space-between; - padding: 0 12px; - cursor: pointer; - position: relative; - border: none; - border-radius: none; - background: transparent; - font-size: 13px; - font-family: Inter, sans-serif; - - & .caret { - fill: var(--color-brand-800); - width: 18px; - height: 18px; - fill: #000; - transform: rotate(-90deg); - transition: transform 200ms ease-in-out; - } - - &:hover { - background: #e8ebfc; - text-decoration: none; - color: var(--color-brand); - } - - &:last-child { - border-bottom: 1px solid var(--color-brand-300); - } - - &:first-child { - border-top-left-radius: 8px; - border-top-right-radius: 8px; - } -} -.dropdown { - overflow: hidden; - visibility: hidden; - transition: - opacity 100ms ease-in-out, - visibility 100ms ease-in-out; - position: absolute; - top: 34px; - left: 1rem; - right: 1rem; - opacity: 0; - border-top-left-radius: 0px; - border-top-right-radius: 0px; - z-index: 1000; - border-top-color: var(--color-brand-200); - &.secondary { - top: calc(100% - 2px); - } - & .item:first-child { - border-top-left-radius: 0px; - border-top-right-radius: 0px; - } - &.open { - opacity: 1; - visibility: visible; - } -} - -/* Dark theme */ - -[data-theme="dark"] { - & .switcher { - & .button { - border-bottom-color: var(--color-gray-800); - &:after { - filter: invert(100%); - } - & .caret { - fill: #F1F1F1; - } - } - & .items { - border-color: var(--color-gray-800); - border-bottom: none; - & .item { - background-color: var(--color-gray-1000); - border-color: var(--color-gray-800); - color: #fff; - &:first-child { - &:hover { - background: var(--color-gray-800); - color: #F1F1F1; - } - } - &:hover { - background-color: var(--color-gray-100); - color: var(--color-blu-600); - - } - } - } - - } - & .dropdown.open.secondary:after { - background: var(--color-gray-1400); - border-left: 1px solid var(--color-gray-800); - border-right: 1px solid var(--color-gray-800); - border-bottom: 1px solid var(--color-gray-800); - } -} diff --git a/src/theme/DocSidebar/Desktop/index.tsx b/src/theme/DocSidebar/Desktop/index.tsx deleted file mode 100644 index 2c4fc1f89..000000000 --- a/src/theme/DocSidebar/Desktop/index.tsx +++ /dev/null @@ -1,41 +0,0 @@ -import React from "react"; -import TOC from "@theme-original/DocSidebar/Desktop"; -import ProductSwitcher from "./ProductSwitcher"; - -import styles from "./styles.module.css"; - -type SidebarItem = { - docId?: string; - href?: string; - label: string; - type: "category" | "link"; - items?: SidebarItem[]; - collapsed?: boolean; - collapsible?: boolean; - unlisted?: boolean; -}; - -type Props = { - sidebar?: SidebarItem[]; - isHidden?: boolean; - onCollapse?: () => void; - path: string; -}; - -const DesktopWrapper: React.FC = (props) => { - return ( -
    -
    - - {/*
    */} -
    -
    - {!!props.sidebar && } -
    - {/* */} -
    -
    - ); -}; - -export default DesktopWrapper; diff --git a/src/theme/DocSidebar/Desktop/styles.module.css b/src/theme/DocSidebar/Desktop/styles.module.css deleted file mode 100644 index d784db6e2..000000000 --- a/src/theme/DocSidebar/Desktop/styles.module.css +++ /dev/null @@ -1,67 +0,0 @@ -:global(.theme-doc-sidebar-container) { - border-right: 0; - margin-top: unset !important; -} - -[data-theme="light"] :global(.theme-doc-sidebar-container) { - background: rgb(249, 249, 249); -} -[data-theme="dark"] :global(.theme-doc-sidebar-container) { - background: #2A2A2A; -} - -.sidebar { - padding-top: 30px; - height: 100dvh; - width: 300px; - position: relative; - & nav { - padding: 0; - } - /* Remove strange padding around docs sidebar nav */ - & div[class^="sidebar"] { - padding-top: 0; - width: auto; - } -} -.sidebarHeader { - position: relative; - z-index: 10; - margin-top: 1rem; - /* padding: 2rem 1rem 1rem 1rem; */ -} -.sidebarHeaderFade { - height: 15px; - background: linear-gradient( - 180deg, - rgba(249, 249, 249, 1) 0%, - rgba(249, 249, 249, 0) 100% - ); -} -[data-theme="dark"] .sidebarHeaderFade { - background: linear-gradient( - 180deg, - rgba(27, 24, 35, 0.5) 0%, - rgba(27, 24, 35, 0) 100% - ); -} -.sidebarNav { - margin-top: -15px; - padding: 1rem; - height: calc(100% - 80px); - overflow-y: auto; - & > div { - margin-top: 15px; - } - & div { - height: auto; - } -} - -.colorModeToggle { - margin-bottom: 16px; -} - -[data-theme="dark"] hr { - opacity: 0.5; -} diff --git a/src/theme/Footer/Copyright/index.tsx b/src/theme/Footer/Copyright/index.tsx deleted file mode 100644 index fcfc8b34a..000000000 --- a/src/theme/Footer/Copyright/index.tsx +++ /dev/null @@ -1,13 +0,0 @@ -import React, {type ReactNode} from 'react'; -import type {Props} from '@theme/Footer/Copyright'; - -export default function FooterCopyright({copyright}: Props): ReactNode { - return ( -
    - ); -} diff --git a/src/theme/Footer/Layout/footer.module.css b/src/theme/Footer/Layout/footer.module.css deleted file mode 100644 index 85e0fb83c..000000000 --- a/src/theme/Footer/Layout/footer.module.css +++ /dev/null @@ -1,153 +0,0 @@ - -html[data-theme="dark"] { - .footer { - background: #1c1c1e; - border-top: 1px solid var(--color-gray-800); - } - .footer a { - color: #F1F1F1; - } -} - -.footer { - padding: 1.5rem 0 1.5rem 0; - background: white; - border-top: 1px solid var(--color-gray-200); - ul, - li { - list-style-type: none; - padding-inline-start: 0; - margin: 0; - } -} -.footer h5 { - font-family: Degular, sans-serif; - font-size: 14px; - font-weight: 600; - margin-bottom: 8px; - line-height: 1; -} -.footer h4 { - font-size: 28px; - font-family: Degular, sans-serif; - font-weight: 600; -} -.footer ul li.a, -.footer ul li a { - padding: 4px 0 1px 0; - border-bottom: 1px solid transparent; - transition: all 0.3s; - color: var(--color-brand); -} -li.copy { - &:before { - content: "©"; - margin-right: 6px; - } -} -.footer li a { - display: inline-block; -} -.copyright { - display: flex; - justify-content: space-between; - align-items: center; - /* padding-top: 1rem; */ - /* margin-top: 16px; */ - /* border-top: 1px solid var(--color-gray-300); */ - font-size: 12px; - font-size: 12px; - font-weight: 400; - @media (max-width: 996px) { - margin-top: 1rem; - } - - & ul:first-child { - & li { - display: inline-block; - padding-left: 20px; - &:first-child { - padding-left: 0; - } - & a { - padding: 0; - } - } - } -} -.footerMobile { - padding: 88px 20px; -} -.mobileTopBar { - padding-bottom: 16px; -} -.mobileCopyright { - border-top: 1px solid var(--color-gray-300); -} -.footerMobile ul { - padding-bottom: 20px; -} -.footerMobile ul li a, -.footerMobile ul li { - color: var(--color-brand); - font-size: 14px; - display: block; - padding: 2px 0; -} - -.footerLinks { - li { - font-size: 14px; - margin-right: 2rem; - } -} - -.button { - display: flex; - align-items: center; - height: 40px; - font-weight: 500; - border-radius: 8px; - color: var(--color-brand); - font-size: 0.9375rem; - line-height: 1; - padding: 0 13px; - text-align: center; - white-space: nowrap; - border: 1px solid var(--color-brand-400); - position: relative; - &:hover { - text-decoration: none; - color: white; - background: var(--color-brand); - border: 1px solid var(--color-brand); - } - &.secondary { - border-color: var(--color-blu); - background: var(--color-blu); - color: white; - transition: all 0.2s; - &:hover { - background-color: var(--color-brand); - border-color: var(--color-brand); - } - &.altStyle { - background-color: rgba(16, 23, 59, 0.8); - } - } - - &.darkMode { - border: 1px solid white; - &:hover { - background: var(--color-blu); - border: 1px solid var(--color-blu); - } - &.secondary { - &:hover { - border-color: white; - background: white; - color: black; - } - } - } -} diff --git a/src/theme/Footer/Layout/index.tsx b/src/theme/Footer/Layout/index.tsx deleted file mode 100644 index f54cede4a..000000000 --- a/src/theme/Footer/Layout/index.tsx +++ /dev/null @@ -1,69 +0,0 @@ -import React, { type ReactNode } from "react"; -import clsx from "clsx"; -import type { Props } from "@theme/Footer/Layout"; -import styles from "./footer.module.css"; - -// todo: clean up files and dark mode - -export default function FooterLayout({ - style, - links, - logo, - copyright, -}: Props): ReactNode { - const currentYear = new Date().getFullYear(); - return ( - - - ); -} diff --git a/src/theme/Footer/LinkItem/index.tsx b/src/theme/Footer/LinkItem/index.tsx deleted file mode 100644 index 59efcbab0..000000000 --- a/src/theme/Footer/LinkItem/index.tsx +++ /dev/null @@ -1,29 +0,0 @@ -import React, {type ReactNode} from 'react'; -import clsx from 'clsx'; -import Link from '@docusaurus/Link'; -import useBaseUrl from '@docusaurus/useBaseUrl'; -import isInternalUrl from '@docusaurus/isInternalUrl'; -import IconExternalLink from '@theme/Icon/ExternalLink'; -import type {Props} from '@theme/Footer/LinkItem'; - -export default function FooterLinkItem({item}: Props): ReactNode { - const {to, href, label, prependBaseUrlToHref, className, ...props} = item; - const toUrl = useBaseUrl(to); - const normalizedHref = useBaseUrl(href, {forcePrependBaseUrl: true}); - - return ( - - {label} - {href && !isInternalUrl(href) && } - - ); -} diff --git a/src/theme/Footer/Links/MultiColumn/index.tsx b/src/theme/Footer/Links/MultiColumn/index.tsx deleted file mode 100644 index 9f30a3f3e..000000000 --- a/src/theme/Footer/Links/MultiColumn/index.tsx +++ /dev/null @@ -1,45 +0,0 @@ -import React, {type ReactNode} from 'react'; -import clsx from 'clsx'; -import LinkItem from '@theme/Footer/LinkItem'; -import type {Props} from '@theme/Footer/Links/MultiColumn'; - -type ColumnType = Props['columns'][number]; -type ColumnItemType = ColumnType['items'][number]; - -function ColumnLinkItem({item}: {item: ColumnItemType}) { - return item.html ? ( -
  • - ) : ( -
  • - -
    • - ); -} - -function Column({column}: {column: ColumnType}) { - return ( -
    -
    {column.title}
    -
      - {column.items.map((item, i) => ( - - ))} -
    -
    - ); -} - -export default function FooterLinksMultiColumn({columns}: Props): ReactNode { - return ( -
    - {columns.map((column, i) => ( - - ))} -
    - ); -} diff --git a/src/theme/Footer/Links/Simple/index.tsx b/src/theme/Footer/Links/Simple/index.tsx deleted file mode 100644 index dc6cf9de7..000000000 --- a/src/theme/Footer/Links/Simple/index.tsx +++ /dev/null @@ -1,36 +0,0 @@ -import React, {type ReactNode} from 'react'; -import clsx from 'clsx'; -import LinkItem from '@theme/Footer/LinkItem'; -import type {Props} from '@theme/Footer/Links/Simple'; - -function Separator() { - return ·; -} - -function SimpleLinkItem({item}: {item: Props['links'][number]}) { - return item.html ? ( - - ) : ( - - ); -} - -export default function FooterLinksSimple({links}: Props): ReactNode { - return ( -
    -
    - {links.map((item, i) => ( - - - {links.length !== i + 1 && } - - ))} -
    -
    - ); -} diff --git a/src/theme/Footer/Links/index.tsx b/src/theme/Footer/Links/index.tsx deleted file mode 100644 index 2dd3d84ad..000000000 --- a/src/theme/Footer/Links/index.tsx +++ /dev/null @@ -1,14 +0,0 @@ -import React, {type ReactNode} from 'react'; - -import {isMultiColumnFooterLinks} from '@docusaurus/theme-common'; -import FooterLinksMultiColumn from '@theme/Footer/Links/MultiColumn'; -import FooterLinksSimple from '@theme/Footer/Links/Simple'; -import type {Props} from '@theme/Footer/Links'; - -export default function FooterLinks({links}: Props): ReactNode { - return isMultiColumnFooterLinks(links) ? ( - - ) : ( - - ); -} diff --git a/src/theme/Footer/Logo/index.tsx b/src/theme/Footer/Logo/index.tsx deleted file mode 100644 index 8274216df..000000000 --- a/src/theme/Footer/Logo/index.tsx +++ /dev/null @@ -1,39 +0,0 @@ -import React, {type ReactNode} from 'react'; -import clsx from 'clsx'; -import Link from '@docusaurus/Link'; -import {useBaseUrlUtils} from '@docusaurus/useBaseUrl'; -import ThemedImage from '@theme/ThemedImage'; -import type {Props} from '@theme/Footer/Logo'; - -import styles from './styles.module.css'; - -function LogoImage({logo}: Props) { - const {withBaseUrl} = useBaseUrlUtils(); - const sources = { - light: withBaseUrl(logo.src), - dark: withBaseUrl(logo.srcDark ?? logo.src), - }; - return ( - - ); -} - -export default function FooterLogo({logo}: Props): ReactNode { - return logo.href ? ( - - - - ) : ( - - ); -} diff --git a/src/theme/Footer/Logo/styles.module.css b/src/theme/Footer/Logo/styles.module.css deleted file mode 100644 index e69de29bb..000000000 diff --git a/src/theme/Footer/index.tsx b/src/theme/Footer/index.tsx deleted file mode 100644 index 595bc51df..000000000 --- a/src/theme/Footer/index.tsx +++ /dev/null @@ -1,26 +0,0 @@ -import React, {type ReactNode} from 'react'; - -import {useThemeConfig} from '@docusaurus/theme-common'; -import FooterLinks from '@theme/Footer/Links'; -import FooterLogo from '@theme/Footer/Logo'; -import FooterCopyright from '@theme/Footer/Copyright'; -import FooterLayout from '@theme/Footer/Layout'; - -function Footer(): ReactNode { - const {footer} = useThemeConfig(); - if (!footer) { - return null; - } - const {copyright, links, logo, style} = footer; - - return ( - 0 && } - logo={logo && } - copyright={copyright && } - /> - ); -} - -export default React.memo(Footer); diff --git a/src/theme/Layout/CookieBanner/Cookie.tsx b/src/theme/Layout/CookieBanner/Cookie.tsx deleted file mode 100644 index de68e90ab..000000000 --- a/src/theme/Layout/CookieBanner/Cookie.tsx +++ /dev/null @@ -1,87 +0,0 @@ -import React from "react"; - -const Cookie = ({ className }) => { - return ( - - - - - - - - - - - - - - - - - - - ); -}; - -export default Cookie; diff --git a/src/theme/Layout/CookieBanner/index.tsx b/src/theme/Layout/CookieBanner/index.tsx deleted file mode 100644 index 8679fff48..000000000 --- a/src/theme/Layout/CookieBanner/index.tsx +++ /dev/null @@ -1,116 +0,0 @@ -import React, { useEffect, useState } from "react"; -import clsx from "clsx"; -import { useCookies } from "react-cookie"; -import Button from "@site/src/components/Button"; -import Cookie from "./Cookie"; -import styles from "./styles.module.css"; - -const CookieBanner = () => { - const [cookies, setCookie, removeCookie] = useCookies([ - "preferencesSet", - "preferencesChoice", - ]); - const [isHidden, setIsHidden] = useState(true); - - const giveConsent = () => { - window.gtag?.("consent", "update", { - ad_user_data: "granted", - ad_personalization: "granted", - ad_storage: "granted", - analytics_storage: "granted", - }); - window.posthog?.opt_in_capturing(); - }; - - const acceptAll = () => { - const twelveMonths = 1000 * 60 * 60 * 24 * 30 * 12; - const expireTime = new Date().getTime() + twelveMonths; - const expireDate = new Date(expireTime); - - setCookie("preferencesSet", true, { expires: expireDate }); - setCookie("preferencesChoice", "all", { expires: expireDate }); - giveConsent(); - }; - - const denyAll = () => { - setCookie("preferencesSet", true); - setCookie("preferencesChoice", "essential"); - }; - - useEffect(() => { - const isBrowser = typeof window !== "undefined"; - if (!isBrowser) return; - - const preferenceSet = cookies.preferencesSet; - const preferredChoice = cookies.preferencesChoice; - - if (preferenceSet && preferredChoice === "all") { - giveConsent(); - } - - setTimeout(() => { - if (!preferenceSet ) { - setIsHidden(false); - return; - } - }, 50); - }, [cookies]); - - if (isHidden) return null; - - return ( -
    -
    -
    -
    -
    -
    - -
    -
    - This website uses cookies to offer you a better browsing - experience.
    - Find out more on{" "} - - how we use cookies - - . -
    -
    -
    -
    -
    - -
    -
    - -
    -
    -
    -
    -
    -
    -
    - ); -}; - -export default CookieBanner; diff --git a/src/theme/Layout/CookieBanner/styles.module.css b/src/theme/Layout/CookieBanner/styles.module.css deleted file mode 100644 index a44539018..000000000 --- a/src/theme/Layout/CookieBanner/styles.module.css +++ /dev/null @@ -1,16 +0,0 @@ -.banner { - background: var(--color-brand); -} - -@media (min-width: 1024px) { - .banner { - background: var(--color-brand); - } -} - -html[data-theme="dark"] { - .banner { - background: #3F3F3F; - border: 1px solid var(--brand-900); - } -} \ No newline at end of file diff --git a/src/theme/Layout/index.js b/src/theme/Layout/index.js deleted file mode 100644 index 9b9547bc9..000000000 --- a/src/theme/Layout/index.js +++ /dev/null @@ -1,23 +0,0 @@ -import React from "react"; -import Layout from "@theme-original/Layout"; -import Head from "@docusaurus/Head"; -import platform_enterprise_latest_version from "@site/platform-enterprise_latest_version"; -import CookieBanner from "./CookieBanner"; - -export default function LayoutWrapper(props) { - return ( - <> - - - - - - - - - - ); -} diff --git a/src/theme/Logo/index.tsx b/src/theme/Logo/index.tsx deleted file mode 100644 index d8d9a7488..000000000 --- a/src/theme/Logo/index.tsx +++ /dev/null @@ -1,98 +0,0 @@ -import React, {type ReactNode} from 'react'; -import Link from '@docusaurus/Link'; -import useBaseUrl from '@docusaurus/useBaseUrl'; -import useDocusaurusContext from '@docusaurus/useDocusaurusContext'; -import {useThemeConfig, type NavbarLogo} from '@docusaurus/theme-common'; -import ThemedImage from '@theme/ThemedImage'; -import type {Props} from '@theme/Logo'; -import { useLocation } from 'react-router-dom'; - -function LogoThemedImage({ - logo, - alt, - imageClassName, -}: { - logo: NavbarLogo; - alt: string; - imageClassName?: string; -}) { - const sources = { - light: useBaseUrl(logo.src), - dark: useBaseUrl(logo.srcDark || logo.src), - }; - const themedImage = ( - - ); - - // Is this extra div really necessary? - // introduced in https://github.com/facebook/docusaurus/pull/5666 - return imageClassName ? ( -
    {themedImage}
    - ) : ( - themedImage - ); -} - -export default function Logo(props: Props): ReactNode { - const { - siteConfig: {title}, - } = useDocusaurusContext(); - const { - navbar: {title: navbarTitle, logo}, - } = useThemeConfig(); - - const {imageClassName, titleClassName, ...propsRest} = props; - const logoLink = useBaseUrl(logo?.href || '/'); - - // If visible title is shown, fallback alt text should be - // an empty string to mark the logo as decorative. - const fallbackAlt = navbarTitle ? '' : title; - - // Use logo alt text if provided (including empty string), - // and provide a sensible fallback otherwise. - const alt = logo?.alt ?? fallbackAlt; - - // Note: This workaround was added to resolve pages from 404ing when navigating away from platform-api paths, due to separate build implementation. - // TODO: Revert this workaround once we have docs in a single build - const location = useLocation(); - const isOnPlatformAPI = location.pathname.includes('/platform-api'); - - return ( - <> - {/* TODO: Revert this workaround once we have docs in a single build*/} - {isOnPlatformAPI ? ( - - {logo && ( - - )} - {navbarTitle != null && {navbarTitle}} - - ) : ( - - {logo && ( - - )} - {navbarTitle != null && {navbarTitle}} - - )} - - ); -} diff --git a/src/theme/MDXComponents.js b/src/theme/MDXComponents.js deleted file mode 100644 index 36b89b171..000000000 --- a/src/theme/MDXComponents.js +++ /dev/null @@ -1,12 +0,0 @@ -import React from "react"; -// Import the original mapper -import MDXComponents from "@theme-original/MDXComponents"; -import CodeBlock from "@theme-original/CodeBlock"; -import Button from "@site/src/components/Button"; - -export default { - // Re-use the default mapping - ...MDXComponents, - CodeBlock, - Button, -}; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/activelink.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/activelink.module.css deleted file mode 100644 index 4e0a3578c..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/activelink.module.css +++ /dev/null @@ -1,32 +0,0 @@ -.navLink { - color: var(--color-brand); - font-size: 0.9rem; - position: relative; - display: inline-block; - &:after { - content: ""; - position: absolute; - left: 0; - bottom: -5px; - width: 100%; - height: 3px; - background-color: var(--color-blu); - opacity: 0; - } - &:hover { - text-decoration: none; - } -} -.isActive { - /* color: #000; */ - color: var(--color-blu); - &::after { - animation: underlineFadeIn 0.3s ease forwards; - animation-delay: 0.1s; - } -} -@keyframes underlineFadeIn { - to { - opacity: 1; - } -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/index.tsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/index.tsx deleted file mode 100644 index 31b1fc10d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/ActiveLink/index.tsx +++ /dev/null @@ -1,49 +0,0 @@ -import React, {useEffect, useState} from "react"; -import { NavLink } from 'react-router-dom'; -import styles from "./activelink.module.css"; - -const ActiveLink = ({ url, apiLink, externalLink, exact, children, customClasses, ...rest }) => { - - const [isActive, setIsActive] = useState(false); - - useEffect(() => { - const currentPath = window.location.pathname; - setIsActive(currentPath.includes('/platform-api')); - }, []); - - if (externalLink) { - return ( - - {children} - - ); - } - - if (apiLink) { - return ( - - {children} - - ) - } - - return ( - - {children} - - ); - }; - -export default ActiveLink; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/index.tsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/index.tsx deleted file mode 100644 index f91fa2509..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/index.tsx +++ /dev/null @@ -1,23 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import styles from "./styles.module.css"; - -type Props = { - toggleMenu: () => void; - isOpen: boolean; -}; - -const Hamburger: React.FC = ({ toggleMenu, isOpen }) => { - return ( -
    - - - -
    - ); -}; - -export default Hamburger; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/styles.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/styles.module.css deleted file mode 100644 index 9cafeb291..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/Hamburger/styles.module.css +++ /dev/null @@ -1,68 +0,0 @@ -.hamburger { - position: relative; - transition: all 0.3s ease-in-out; - outline: none !important; - border: none; - background: transparent; - padding: 0; - margin: 0; - border-radius: 0; - width: 40px; - &:hover { - cursor: pointer; - background: transparent; - } - &:focus { - border: 2px solid blue; - } - & span { - width: 20px; - height: 2px; - background-color: var(--color-brand); - display: block; - margin: 4.8px auto; - transition: all 0.3s ease-in-out; - } - &:before { - content: ""; - position: absolute; - box-sizing: border-box; - width: 20px; - height: 42px; - border: 3px solid transparent; - top: calc(50% - 21px); - left: calc(50% - 21px); - border-radius: 100%; - transition: all 0.3s ease-in-out; - background: none; - } - &.open { - @media (max-width: 996px) { - transform: rotate(45deg) translate(0, 0); - & span { - width: 21px; - } - - & span:nth-child(2) { - opacity: 0; - } - - & span:nth-child(1) { - transform: translateY(7px); - } - - & span:nth-child(3) { - transform: translateY(-6.5px) rotate(90deg); - } - } - } -} - -html[data-theme="dark"] .hamburger { - &:focus { - border: 2px solid #F1F1F1;; - } - & span { - background-color: #F1F1F1;; - } -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/MoonIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/MoonIcon.svg deleted file mode 100644 index 4ea85c8ae..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/MoonIcon.svg +++ /dev/null @@ -1,5 +0,0 @@ - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/SunIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/SunIcon.svg deleted file mode 100644 index 6ffc45d7d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/SunIcon.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/index.jsx deleted file mode 100644 index f03305c51..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/index.jsx +++ /dev/null @@ -1,43 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import Link from "../../../_shared/Link"; -import styles from "./styles.module.css"; -import { useColorMode } from "@docusaurus/theme-common"; -import Sun from "../images/SunIcon.svg"; -import Moon from "../images/MoonIcon.svg"; - -const NavMeta = ({ isDark }) => { - let altStyle = false; - if (typeof window !== "undefined") - if (window.location.pathname === "/") altStyle = true; - const { colorMode, setColorMode } = useColorMode(); - return ( -
    -
    - - Log In - -
    - - Sign Up - -
    - ); -}; - -export default NavMeta; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/styles.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/styles.module.css deleted file mode 100644 index 3392b4d45..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/LoginButton/styles.module.css +++ /dev/null @@ -1,110 +0,0 @@ -.button { - display: flex; - align-items: center; - height: 40px; - font-weight: 500; - border-radius: 8px; - color: var(--color-brand); - font-size: .9375rem; - background: white; - line-height: 1; - padding: 0 13px; - text-align: center; - white-space: nowrap; - border: 1px solid var(--color-brand-400); - position: relative; - &:hover { - text-decoration: none; - color: white; - background: var(--color-brand); - border: 1px solid var(--color-brand); - } - &.secondary { - border-color: var(--color-blu); - background: var(--color-blu); - color: white; - transition: all 0.2s; - &:hover { - background-color: var(--color-brand); - border-color: var(--color-brand); - } - &.altStyle { - background-color: rgba(16, 23, 59, 0.8); - } - } -} - -.container { - display: flex !important; - align-items: center; - visibility: visible; -} - -.toggleButton { - display: flex; - flex-direction: row; - margin-right: 0.75rem; -} - -.buttonContainer { - display: flex; -} - -.signUpButton { - margin-left: 0.75rem; -} - -.signUpText { - display: inline; -} - -.lightDarkMode { - width: 30px; - height: 30px; - position: relative; - &:after { - position: absolute; - top: 0; - left: 0; - bottom: 0; - right: 0; - content: ''; - background-image: url('SunIcon.svg'); - background-repeat: no-repeat; - background-size: 80%; - background-position: center; - } -} - -html[data-theme="dark"] { - .lightDarkMode { - &:after { - background-size: 70%; - background-image: url('MoonIcon.svg'); - } - } -} - -html[data-theme="dark"] .button { - background: var(--color-gray-400); - border-color: var(--color-gray-400); - color: var(--color-brand-1000); - &:hover { - background-color: var(--color-gray-900); - border-color: var(--color-gray-900); - color: #F1F1F1; - } - &.secondary { - border-color: var(--color-blu); - background: var(--color-blu); - color: #F1F1F1;; - &:hover { - background-color: var(--color-blu-800); - border-color: var(--color-blu-800); - color: #F1F1F1;; - } - &.altStyle { - background-color: rgba(16, 23, 59, 0.8); - } - } -} \ No newline at end of file diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/NavItem.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/NavItem.jsx deleted file mode 100644 index 6b9d1e57d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/NavItem.jsx +++ /dev/null @@ -1,79 +0,0 @@ -import React from "react"; -import clsx from "clsx"; - -import Link from "@docusaurus/Link"; -import { useHeaderContext } from "../../context"; - -import styles from "./styles.module.css"; - -const NavItem = ({ id, children, simple, isActive }) => { - const [lastClickTime, setLastClickTime] = React.useState(null); - const context = useHeaderContext(); - const { isActiveNested, isMenuOpen } = context; - const delay = 100; - const timeoutTime = isMenuOpen ? 0 : delay; - const timeoutRef = React.useRef(null); - - let to = id; - if (!id.startsWith("http")) to = `https://seqera.io${id}`; - - if (simple) { - return ( - - {children} - - ); - } - - function timeSinceLastOpened() { - if (lastClickTime === null) return 1000; - const now = new Date().getTime(); - return now - lastClickTime; - } - - function updateTime() { - const now = new Date().getTime(); - setLastClickTime(now); - } - - function handleNav(id) { - if (timeSinceLastOpened() < delay) return; - updateTime(); - context.handleNav(id); - } - - function handleHover(id) { - if (timeSinceLastOpened() < 400) return; - updateTime(); - context.handleHover(id); - } - - return ( - - ); -}; - -export default NavItem; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.svg deleted file mode 100644 index 7397b5db8..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.svg +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.tsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.tsx deleted file mode 100644 index 3eed0862a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/AiIcon.tsx +++ /dev/null @@ -1,24 +0,0 @@ -import * as React from "react"; -const SvgAiIcon = (props) => ( - - - - -); -export default SvgAiIcon; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.inline.svg deleted file mode 100644 index aa83e8654..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.inline.svg +++ /dev/null @@ -1,7 +0,0 @@ - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.svg deleted file mode 100644 index 2ff7081e1..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ContainersIcon.svg +++ /dev/null @@ -1,12 +0,0 @@ - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.inline.svg deleted file mode 100644 index 5a8905d38..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.inline.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.svg deleted file mode 100644 index 7eaab3682..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/DocsIcon.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.inline.svg deleted file mode 100644 index f34ba464b..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.inline.svg +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.svg deleted file mode 100644 index 022dfc1df..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/ForumIcon.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.inline.svg deleted file mode 100644 index 817b15495..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.svg deleted file mode 100644 index 817b15495..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/HamburgerIcon.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.inline.svg deleted file mode 100644 index f5e656a35..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.inline.svg +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.svg deleted file mode 100644 index 1209419fc..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/Logo.svg +++ /dev/null @@ -1,30 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/LogoWhite.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/LogoWhite.svg deleted file mode 100644 index 6c24ed770..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/LogoWhite.svg +++ /dev/null @@ -1,30 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/MoonIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/MoonIcon.svg deleted file mode 100644 index 4ea85c8ae..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/MoonIcon.svg +++ /dev/null @@ -1,5 +0,0 @@ - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.inline.svg deleted file mode 100644 index d60651259..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.inline.svg +++ /dev/null @@ -1,5 +0,0 @@ - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.svg deleted file mode 100644 index ba94ddb85..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/PipelinesIcon.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/SunIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/SunIcon.svg deleted file mode 100644 index 6ffc45d7d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/images/SunIcon.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx deleted file mode 100644 index 1d5a77f9e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/index.jsx +++ /dev/null @@ -1,110 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import NavItem from "./NavItem"; -import Logo from "./images/Logo.svg"; -import LogoWhite from "./images/LogoWhite.svg"; -import LoginButton from "./LoginButton"; -import styles from "./styles.module.css"; -import Hamburger from "./Hamburger"; -import { useHeaderContext } from "../../context"; -import ActiveLink from "./ActiveLink"; -import NavbarLogo from '@theme/Navbar/Logo'; -import NavbarColorModeToggle from '@theme/Navbar/ColorModeToggle'; -import SearchBar from "@theme/SearchBar"; - - -const NavItems = ({ isDark = false, hideMenu }) => { - const { - hasScrolled, - isMenuOpen, - toggleMobileMenu, - headerType, - isHeaderVisible, - } = useHeaderContext(); - - - - return ( -
    -
    -
    - -
    - - {!hideMenu && ( - - )} -
    -
    -
      -
    • - - Cloud - -
      • -
    • - - Enterprise - -
      • -
    • - -
      - Nextflow - -
      -       -
      • -
    • - - MultiQC - -
      • -
    • - - Wave - -
      • -
    • - - Fusion - -
      • -
    - -
    -
    - ); -}; - -export default NavItems; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/styles.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/styles.module.css deleted file mode 100644 index f47758244..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/NavItems/styles.module.css +++ /dev/null @@ -1,186 +0,0 @@ -.container { - padding-left: 1rem; - padding-right: 1rem; - width: 100%; - display: flex; - flex-direction: column; -} - -.headerRow { - height: 72px; - width: 100%; - display: flex; - align-items: center; - justify-content: space-between; -} - -.logoContainer { - display: flex; - align-items: center; - flex: 0 0 200px; - - /* Ensure logo displays properly with correct size */ - & img { - display: block; - width: 180px; - height: 40px; - object-fit: contain; - } - - & svg { - display: block; - width: 180px; - height: 40px; - } - - /* Let Docusaurus ThemedImage component handle light/dark switching naturally */ - & [data-theme="light"] img[src*="LogoWhite"] { - display: none; - } - - & [data-theme="dark"] img[src*="Logo.svg"]:not([src*="LogoWhite"]) { - display: none; - } -} - -.searchContainer { - display: flex; - align-items: center; - flex: 1; - justify-content: center; -} - -.nav { - display: flex; - justify-content: flex-end; - align-items: center; - flex: 0 0 200px; - - @media (max-width: 996px) { - display: none; - } -} - -.navItemContainer { - margin-right: 0.75rem; -} - -.linkContainer { - margin-left: 2rem; -} - -.linkContent { - display: flex; - flex-direction: row; - align-items: center; -} - -.linkIcon { - width: 10px; - height: 10px; - opacity: 0.5; - margin-left: 0.25rem; -} - -.navItemSpacing { - margin-right: 1.5rem; -} -.navItem { - position: relative; - height: 40px; - width: 40px; - transition: all 0.2s; - cursor: pointer; - text-decoration: none; - outline: none; - display: flex; - align-items: center; - justify-content: center; - border-radius: 8px; - border: 1px solid transparent; - background-color: transparent; - &:hover, - &.active { - border: 1px solid var(--color-brand); - color: var(--color-brand); - text-decoration: none; - } - &:focus-visible { - border: 2px solid blue; - } -} -.nav.dark { - & .navItem { - color: white; - &:hover::after { - background-color: white; - } - } -} - -.contentRow { - width: 100%; - display: flex; - align-items: center; - justify-content: space-between; -} - -.navListContainer { - display: flex; - flex-direction: row; -} - -.navList { - list-style-type: none; - margin-block-start: 0; - margin-block-end: 0; - padding-inline-start: 0; - display: flex; - flex-direction: row; - - a { - color: var(--color-brand); - font-size: 0.9rem; - position: relative; - display: inline-block; - padding: .125rem .45rem; - &:after { - content: ""; - position: absolute; - left: 0; - bottom: -5px; - width: 100%; - height: 4px; - background-color: var(--color-blu); - opacity: 0; - transition: opacity 0.3s ease; - } - &:hover { - text-decoration: none; - background: var(--color-gray-200); - border-radius: 4px; - color: var(--color-brand); - } - } -} - -html[data-theme="dark"] .navList { - a { - &:hover { - background: var(--color-gray-1000); - } - } -} - -html[data-theme="dark"] .navList { - a { - color: #F1F1F1;; - &:after { - background-color: var(--color-blu-300); - } - &:hover { - text-decoration: none; - color: #F1F1F1;; - } - } -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/Resources.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/Resources.jsx deleted file mode 100644 index 744ee0054..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/Resources.jsx +++ /dev/null @@ -1,102 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import Link from "./shared/Link"; -import styles from "./submenu.module.css"; - - -import { - AiIcon, - About, - Blog, - Careers, - CaseStudies, - Contact, - Core, - Docs, - Events, - Feedback, - Forum, - Nextflow, - Partners, - PlatformIcon, - Podcast, - Press, - Support, - Whitepapers, -} from "./shared/icons"; - -const links = { - Help: [ - ["Forum", "https://community.seqera.io", Forum], - ["Support Portal", "https://support.seqera.io", Support], - ["Nextflow Slack", "https://www.nextflow.io/slack-invite.html", Nextflow], - ["Seqera AI", "/ask-ai", AiIcon], - ], - Company: [ - ["Seqera.io", "/about/", About], - ["Contact us", "/contact-us/", Contact], - ["Submit Feedback", "/feedback/", Feedback], - ], -}; - -function isActive(id) { - if (typeof window === "undefined") return false; - return window.location.pathname === id; -} - -const LinkItem = ({ to, children }) => { - let href = to; - let sameTab = false; - if (!to.startsWith("http")) { - href = `https://seqera.io${to}`; - } - if (href.includes("seqera.io")) sameTab = true; - return ( - - {children} - - ); -}; - -const Column = ({ title, links }) => { - return ( -
    -

    - {title} -

    -
      - {links.map(([label, href, Icon]) => ( -
    • - -
      - {label} -       -
      • - ))} -
    -
    - ); -}; - -const Resources = () => { - return ( -
    -
    - {Object.entries(links).map(([title, links]) => ( - - ))} -
    -
    - ); -}; - -export default Resources; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/index.jsx deleted file mode 100644 index f4ffc752a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/index.jsx +++ /dev/null @@ -1,46 +0,0 @@ -import React from "react"; -import { motion, AnimatePresence } from "framer-motion"; -import Resources from "./Resources"; -import { useHeaderContext } from "../../context"; -import clsx from "clsx"; -import styles from "./submenu.module.css"; - -const navVariants = { - enter: { y: -20, opacity: 0 }, - idle: { y: 0, opacity: 1 }, - exit: { opacity: 0, y: -20 }, -}; - -const transition = { - ease: "easeOut", - duration: 0.2, -}; - -const Submenu = ({ hideMenu }) => { - const { activeMenu, isMenuOpen } = useHeaderContext(); - // const activeMenu = "resources"; - // const isMenuOpen = true; - if (hideMenu) return null; - return ( - - {isMenuOpen && ( - - -
    - {activeMenu === "resources" && } -
    - -     - )} -     - ); -}; - -export default Submenu; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Link.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Link.jsx deleted file mode 100644 index 90b8004d7..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Link.jsx +++ /dev/null @@ -1,27 +0,0 @@ -import React from "react"; - -import Link from "@docusaurus/Link"; -import { useHeaderContext } from "../../../context"; - -const PanelLink = ({ children, to, className, sameTab }) => { - const { closeMenu } = useHeaderContext(); - function handleClick(e) { - if (e.shiftKey || e.ctrlKey || e.metaKey) return; - closeMenu(); - } - - if (sameTab) { - return ( - - {children} - - ); - } - return ( - - {children} - - ); -}; - -export default PanelLink; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/index.jsx deleted file mode 100644 index 847d0a608..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/index.jsx +++ /dev/null @@ -1,18 +0,0 @@ -import React from "react"; -import clsx from "clsx"; - -import styles from "./styles.module.css"; - -const EventPanel = ({ className, children, highlighted }) => { - return ( -
    - {children} -
    - ); -}; - -export default EventPanel; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/styles.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/styles.module.css deleted file mode 100644 index b2263d5ff..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/Panel/styles.module.css +++ /dev/null @@ -1,13 +0,0 @@ -.panel { - position: relative; - background: var(--color-brand-100); - color: var(--color-brand); - padding: 20px; - border-radius: 6px; - width: 100%; - height: 100%; - &.highlighted { - background: var(--color-brand); - color: white; - } -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/About.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/About.svg deleted file mode 100644 index 434e8b770..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/About.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AboutWhite.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AboutWhite.svg deleted file mode 100644 index 651d982da..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AboutWhite.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AiIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AiIcon.svg deleted file mode 100644 index ef6782a26..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/AiIcon.svg +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Blog.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Blog.svg deleted file mode 100644 index 1037a7010..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Blog.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Careers.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Careers.svg deleted file mode 100644 index 87fdf3a8a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Careers.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/CaseStudies.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/CaseStudies.svg deleted file mode 100644 index 663f3f6f6..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/CaseStudies.svg +++ /dev/null @@ -1,15 +0,0 @@ - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Contact.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Contact.svg deleted file mode 100644 index c600e9746..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Contact.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Core.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Core.svg deleted file mode 100644 index da336eec4..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Core.svg +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Docs.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Docs.svg deleted file mode 100644 index 508a50391..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Docs.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/DocsDark.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/DocsDark.svg deleted file mode 100644 index bb6db452a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/DocsDark.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.inline.svg deleted file mode 100644 index 73b6e5d1b..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.svg deleted file mode 100644 index f2bf8ba5e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Events.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.inline.svg deleted file mode 100644 index a7be940d6..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.inline.svg +++ /dev/null @@ -1,11 +0,0 @@ - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.svg deleted file mode 100644 index 59cb512c1..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Feedback.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.inline.svg deleted file mode 100644 index f34ba464b..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.inline.svg +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.svg deleted file mode 100644 index 9aa796b33..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Forum.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.inline.svg deleted file mode 100644 index 2261b440e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.inline.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.svg deleted file mode 100644 index 3edbf89ec..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Fusion.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.inline.svg deleted file mode 100644 index c5d3e2a94..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.svg deleted file mode 100644 index c5d3e2a94..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Github.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.inline.svg deleted file mode 100644 index 0dd5ccf25..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.inline.svg +++ /dev/null @@ -1,5 +0,0 @@ - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.svg deleted file mode 100644 index e78552366..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Modules.svg +++ /dev/null @@ -1,18 +0,0 @@ - - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.inline.svg deleted file mode 100644 index 5a2bd3e14..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.inline.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.svg deleted file mode 100644 index 1de69441d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/MultiQC.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.inline.svg deleted file mode 100644 index f1ef2c83e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.inline.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.svg deleted file mode 100644 index 0b3633fd5..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Nextflow.svg +++ /dev/null @@ -1,6 +0,0 @@ - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.inline.svg deleted file mode 100644 index a5ce81873..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.svg deleted file mode 100644 index bcac19781..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Partners.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/PlatformIcon.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/PlatformIcon.svg deleted file mode 100644 index e92e5b7c1..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/PlatformIcon.svg +++ /dev/null @@ -1,17 +0,0 @@ - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.inline.svg deleted file mode 100644 index 6a8380f38..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.svg deleted file mode 100644 index a810d3222..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Podcast.svg +++ /dev/null @@ -1,19 +0,0 @@ - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.inline.svg deleted file mode 100644 index a00b90100..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.svg deleted file mode 100644 index 44e76b60e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Press.svg +++ /dev/null @@ -1,17 +0,0 @@ - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/SeqeraPlatform.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/SeqeraPlatform.svg deleted file mode 100644 index e13332931..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/SeqeraPlatform.svg +++ /dev/null @@ -1,31 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.inline.svg deleted file mode 100644 index 99b4f8a2e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.svg deleted file mode 100644 index afb1b26fc..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Support.svg +++ /dev/null @@ -1,16 +0,0 @@ - - - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.inline.svg deleted file mode 100644 index af54d7e72..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.svg deleted file mode 100644 index db2757adb..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Tag.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.inline.svg deleted file mode 100644 index 8316aad5a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.inline.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.svg deleted file mode 100644 index b8bc52643..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Wave.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.inline.svg deleted file mode 100644 index 5e5c796a8..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.inline.svg +++ /dev/null @@ -1,3 +0,0 @@ - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.svg b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.svg deleted file mode 100644 index 5a0a11670..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/Whitepapers.svg +++ /dev/null @@ -1,14 +0,0 @@ - - - - - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/index.ts b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/index.ts deleted file mode 100644 index 5cc41a865..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons/index.ts +++ /dev/null @@ -1,55 +0,0 @@ -import About from "./About.svg"; -import AboutWhite from "./AboutWhite.svg"; -import AiIcon from "./AiIcon.svg"; -import Blog from "./Blog.svg"; -import Careers from "./Careers.svg"; -import CaseStudies from "./CaseStudies.svg"; -import Contact from "./Contact.svg"; -import Core from "./Core.svg"; -import Docs from "./Docs.svg"; -import DocsDark from "./DocsDark.svg"; -import Events from "./Events.svg"; -import Feedback from "./Feedback.svg"; -import Forum from "./Forum.svg"; -import Github from "./Github.svg"; -import Partners from "./Partners.svg"; -import PlatformIcon from "./PlatformIcon.svg"; -import Podcast from "./Podcast.svg"; -import Press from "./Press.svg"; -import Support from "./Support.svg"; -import Tag from "./Tag.svg"; -import Whitepapers from "./Whitepapers.svg"; -import MultiQC from "./MultiQC.svg"; -import Nextflow from "./Nextflow.svg"; -import Fusion from "./Fusion.svg"; -import Wave from "./Wave.svg"; -import Modules from "./Modules.svg"; - -export { - AiIcon, - About, - AboutWhite, - Blog, - Careers, - CaseStudies, - Contact, - Core, - Docs, - DocsDark, - Events, - Feedback, - Forum, - Github, - Partners, - PlatformIcon, - Podcast, - Press, - Support, - Tag, - Whitepapers, - MultiQC, - Nextflow, - Fusion, - Wave, - Modules, -}; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/submenu.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/submenu.module.css deleted file mode 100644 index 03e97a55d..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/Submenu/submenu.module.css +++ /dev/null @@ -1,87 +0,0 @@ -.submenu { - border: 1px solid var(--color-gray-300); - position: absolute; - top: 4rem; - right: 1rem; - border-radius: 0.375rem; - box-shadow: 0 10px 15px -3px rgba(0, 0, 0, 0.1), 0 4px 6px -2px rgba(0, 0, 0, 0.05); - z-index: 999; -} - -.submenu ul { - list-style: none; - padding: 0; - margin: 0; -} - -.submenuContent { - width: 100%; - height: 100%; - padding-top: 0.5rem; -} -.submenuLink { - color: var(--color-brand); - &:hover { - color: var(--color-brand); - background: var(--color-blu-100); - text-decoration: none; - } -} -[data-theme="dark"] { - .submenu { - border: 1px solid var(--color-gray-600); - } - .submenuLink { - &:hover { - color: var(--color-brand); - background: var(--color-brand-300); - transition: none; - .iconItem { - border: 1px solid var(--color-gray-600); - } - } - } -} - -.iconItem { - border: 1px solid var(--color-gray-400); - background: white; - border-radius: 4px; - height: 32px; - width: 32px; - padding: 2px; - display: flex; - justify-content: center; - align-items: center; - margin-right: 5px; - &:hover { - border: 1px solid var(--color-brand-600); - } -} - -[data-theme="light"] .submenu { - background: white; - - h3 { - color: var(--color-brand-700); - } -} - -[data-theme="dark"] .submenu { - background: #1c1c1e; - color: #F1F1F1; - a { - color: #F1F1F1; - } - h3 { - color: #F1F1F1; - } - svg { - filter: invert(100%); - } -} - -[data-theme="dark"] .iconItem { - background: #1c1c1e; - border: 1px solid var(--color-gray-600); -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/index.jsx deleted file mode 100644 index ae4698dad..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/index.jsx +++ /dev/null @@ -1,30 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import Submenu from "./Submenu"; -import NavItems from "./NavItems"; -import { useHeaderContext } from "../context"; - -import styles from "./styles.module.css"; - -const Layout = ({ headerRef }) => { - const { hasScrolled, closeMenu, hideMenu } = useHeaderContext(); - const timeoutRef = React.useRef(null); - - return ( -
    clearTimeout(timeoutRef.current)} - onMouseLeave={() => (timeoutRef.current = setTimeout(closeMenu, 200))} - > -
    - - -
    -
    - ); -}; - -export default Layout; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/styles.module.css b/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/styles.module.css deleted file mode 100644 index 959430bc2..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/HeaderDesktop/styles.module.css +++ /dev/null @@ -1,43 +0,0 @@ -:root { - --headerHeight: 114px; -} - -html[data-theme="dark"] { - .header { - background: #F1F1F1; - } -} - - -html[data-theme="dark"] { - .header { - background: #1C1C1E; - border-bottom: 1px solid var(--color-gray-800); - } - .footer a { - color: #F1F1F1; - } -} - - -.header { - z-index: 999; - position: fixed; - /* height: var(--headerHeight); */ - display: flex; - align-items: center; - top: 0; - left: 0; - right: 0; - transition: all 0.2s; - border-bottom: 1px solid var(--color-gray-200); - - &.minimal, - &.staticPosition { - position: absolute; - background: transparent; - } - &.hasScrolled { - box-shadow: 0 0 100px rgba(0, 0, 0, 0.2); - } -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/_shared/Link.jsx b/src/theme/Navbar/Layout/SeqeraHeader/_shared/Link.jsx deleted file mode 100644 index 6bc42d5d6..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/_shared/Link.jsx +++ /dev/null @@ -1,25 +0,0 @@ -import React from "react"; -import DocusaurusLink from "@docusaurus/Link"; - -const Link = ({ children, className, onClick, title, sameTab, ...props }) => { - let to = props?.to || props?.href; - - if (to && !to.startsWith("http")) to = `https://seqera.io${to}`; - let isExternal = true; - if (sameTab) isExternal = false; - - return ( - - {children} - - ); -}; - -export default Link; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-down.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-down.inline.svg deleted file mode 100644 index 91577beda..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-down.inline.svg +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-right.inline.svg b/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-right.inline.svg deleted file mode 100644 index 32bfaff4a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/_shared/angle-right.inline.svg +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - - - diff --git a/src/theme/Navbar/Layout/SeqeraHeader/context.js b/src/theme/Navbar/Layout/SeqeraHeader/context.js deleted file mode 100644 index a3172bb8c..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/context.js +++ /dev/null @@ -1,9 +0,0 @@ -import { createContext, useContext } from "react" - -const HeaderContext = createContext({}) - -const useHeaderContext = () => { - return useContext(HeaderContext) -} - -export { HeaderContext, useHeaderContext } diff --git a/src/theme/Navbar/Layout/SeqeraHeader/hooks/useMediaQuery.js b/src/theme/Navbar/Layout/SeqeraHeader/hooks/useMediaQuery.js deleted file mode 100644 index 33101836a..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/hooks/useMediaQuery.js +++ /dev/null @@ -1,68 +0,0 @@ -/** - * Thankfully borrowed from material ui - */ -import React from "react"; - -export default function useMediaQuery(queryInput, options = {}) { - const query = queryInput.replace(/^@media( ?)/m, ""); - - // Wait for jsdom to support the match media feature. - // All the browsers Material-UI support have this built-in. - // This defensive check is here for simplicity. - // Most of the time, the match media logic isn't central to people tests. - const supportMatchMedia = - typeof window !== "undefined" && typeof window.matchMedia !== "undefined"; - - const { - defaultMatches = false, - matchMedia = supportMatchMedia ? window.matchMedia : null, - noSsr = false, - ssrMatchMedia = null, - } = { - ...options, - }; - - const [match, setMatch] = React.useState(() => { - if (noSsr && supportMatchMedia) { - return matchMedia(query).matches; - } - if (ssrMatchMedia) { - return ssrMatchMedia(query).matches; - } - - // Once the component is mounted, we rely on the - // event listeners to return the correct matches value. - return defaultMatches; - }); - - React.useEffect(() => { - let active = true; - - if (!supportMatchMedia) { - return undefined; - } - - const queryList = matchMedia(query); - const updateMatch = () => { - // Workaround Safari wrong implementation of matchMedia - // TODO can we remove it? - // https://github.com/mui-org/material-ui/pull/17315#issuecomment-528286677 - if (active) { - setMatch(queryList.matches); - } - }; - updateMatch(); - queryList.addListener(updateMatch); - return () => { - active = false; - queryList.removeListener(updateMatch); - }; - }, [query, matchMedia, supportMatchMedia]); - - if (process.env.NODE_ENV !== "production") { - // eslint-disable-next-line react-hooks/rules-of-hooks - React.useDebugValue({ query, match }); - } - - return match; -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/hooks/useOutsideClick.js b/src/theme/Navbar/Layout/SeqeraHeader/hooks/useOutsideClick.js deleted file mode 100644 index 812b3531e..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/hooks/useOutsideClick.js +++ /dev/null @@ -1,28 +0,0 @@ -import { useEffect } from "react"; - -export default function useOutsideClick(ref, handler, enabled) { - useEffect(() => { - const isSSR = typeof window === "undefined"; - if (!isSSR && enabled) { - const listener = (event) => { - const el = ref?.current; - - if (!el || el.contains(event.target)) { - return; - } - - handler(event); - }; - - document.addEventListener("mousedown", listener); - document.addEventListener("touchstart", listener); - - return () => { - document.removeEventListener("mousedown", listener); - document.removeEventListener("touchstart", listener); - }; - } - - return () => {}; - }, [ref, handler, enabled]); -} diff --git a/src/theme/Navbar/Layout/SeqeraHeader/index.jsx b/src/theme/Navbar/Layout/SeqeraHeader/index.jsx deleted file mode 100644 index 61166b166..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/index.jsx +++ /dev/null @@ -1,72 +0,0 @@ -import React, { useState, useRef, useEffect } from "react"; - -import HeaderDesktop from "./HeaderDesktop"; -import useOutsideClick from "./hooks/useOutsideClick"; -import useMediaQuery from "./hooks/useMediaQuery"; -import { HeaderContext } from "./context"; - -const Header = ({ theme }) => { - const headerRef = useRef(); - - const [activeMenu, setActiveMenu] = useState(""); - - const closeMenu = () => { - setActiveMenu(""); - }; - - const handleNav = (path) => { - if (path === activeMenu) { - setActiveMenu(""); - return; - } - setActiveMenu(path); - }; - - const handleHover = (path) => { - if (path === activeMenu) return; - setActiveMenu(path); - }; - - const handleBack = () => { - let newPath = activeMenu.split("/").slice(0, -1).join("/"); - - setActiveMenu(newPath || "/"); - }; - - const isActiveNested = (path) => { - return activeMenu.includes(path); - }; - - const isActive = (path) => { - return activeMenu === path; - }; - - const isSmallScreen = useMediaQuery("(max-width: 995px)"); - - useOutsideClick(headerRef, closeMenu, true); - - const isMenuOpen = activeMenu !== ""; - - if (isSmallScreen) return null; - - return ( - - {!isSmallScreen && } - - ); -}; - -export default Header; diff --git a/src/theme/Navbar/Layout/SeqeraHeader/links.js b/src/theme/Navbar/Layout/SeqeraHeader/links.js deleted file mode 100644 index c847a9d9f..000000000 --- a/src/theme/Navbar/Layout/SeqeraHeader/links.js +++ /dev/null @@ -1,34 +0,0 @@ -const company = { - "Seqera.io": "https://seqera.io", - "Contact Us": "https://seqera.io/contact-us", - "Submit Feedback": "https://seqera.io/feedback/", -}; - -const products = { - Cloud: "/cloud", - Enterprise: "/cloud-enterprise", - Nextflow: "/nextflow", - MultiQC: "/multiqc", - Wave: "/wave", - Fusion: "/fusion", -}; - -const help = { - "Support Portal": "https://seqera.io/cloud", - Forum: "https://seqera.io/cloud-enterprise", - "Nextflow Slack": "https://seqera.io/blog/nextflow-is-moving-to-slack/", - "Seqera AI": "https://seqera.io/ask-ai" -}; - -const privacy = { - "User agreement": "https://seqera.io/user-agreement/", - "Privacy statement": "https://seqera.io/privacy-policy/", -}; - - -export const links = { - company, - products, - privacy, - help -}; diff --git a/src/theme/Navbar/Layout/index.jsx b/src/theme/Navbar/Layout/index.jsx deleted file mode 100644 index bfdc11b20..000000000 --- a/src/theme/Navbar/Layout/index.jsx +++ /dev/null @@ -1,107 +0,0 @@ -import React, { useEffect } from "react"; -import clsx from "clsx"; -import { useThemeConfig } from "@docusaurus/theme-common"; -import { - useHideableNavbar, - useNavbarMobileSidebar, -} from "@docusaurus/theme-common/internal"; -import { translate } from "@docusaurus/Translate"; -import NavbarMobileSidebar from "@theme/Navbar/MobileSidebar"; -import Link from "@docusaurus/Link"; -import { useLocation } from "@docusaurus/router"; - -import SeqeraHeader from "./SeqeraHeader"; -import styles from "./styles.module.css"; -import custom from "./styles.custom.module.css"; -import useMediaQuery from "./SeqeraHeader/hooks/useMediaQuery"; -import { useColorMode } from "@docusaurus/theme-common"; -import Sun from "./SeqeraHeader/HeaderDesktop/NavItems/images/SunIcon.svg"; -import Moon from "./SeqeraHeader/HeaderDesktop/NavItems/images/MoonIcon.svg"; - -{ - /* Desktop nav */ -} -function Container({ children, isMobile }) { - if (isMobile) return children; - return ( -
    -
    - -
    - {/* Navbar normally goes here. - Docusaurus expects a classname, so we have a dummy element - with zero dimensions and display:none in main.css. - See https://github.com/facebook/docusaurus/issues/7505 - - Note - navbar is used for mobile styles, so CSS - only hides it on bigger screens. - */} -
    -
    - ); -} - -{ - /* Mobile nav */ -} -export default function NavbarLayout({ children }) { - const { - navbar: { hideOnScroll, style }, - } = useThemeConfig(); - const mobileSidebar = useNavbarMobileSidebar(); - const { navbarRef, isNavbarVisible } = useHideableNavbar(hideOnScroll); - const isMobile = useMediaQuery("(max-width: 995px)"); - const location = useLocation(); - const isHome = location.pathname === "/"; - - const { colorMode, setColorMode } = useColorMode(); - - return ( - - - - ); -} diff --git a/src/theme/Navbar/Layout/styles.custom.module.css b/src/theme/Navbar/Layout/styles.custom.module.css deleted file mode 100644 index 638d4c3c2..000000000 --- a/src/theme/Navbar/Layout/styles.custom.module.css +++ /dev/null @@ -1,90 +0,0 @@ -html { - @media (min-width: 996px) { - scroll-padding-top: 110px; - } -} -.siteHeader { - background: var(--ifm-background-surface-color); - background: var(--color-brand-1400); - position: sticky; - z-index: 20; - left: 0; - top: 0; - right: 0; - & :global(.navbar) { - align-items: center; - } - & :global(.navbar__item) { - white-space: nowrap; - } -} -.seqeraHeader { - position: relative; - height: 73px; - border-bottom: 1px solid var(--ifm-toc-border-color); - & > header { - z-index: 301; - position: absolute; - left: 0; - right: 0; - top: 0; - background: white; - } - @media (max-width: 995px) { - display: none; - } -} -.siteNav { - background: var(--ifm-background-surface-color); - border-bottom: 1px solid var(--ifm-toc-border-color); - & :global(.navbar__brand) { - display: none; - } - & :global(.navbar) { - background: transparent; - box-shadow: none; - & :global(.navbar__item) { - font-size: 14px; - font-weight: 600; - position: relative; - letter-spacing: 0.17px; - font-weight: 400; - font-size: 15px; - margin-right: 10px; - @media (min-width: 1100px) { - margin-right: 20px; - } - &:hover, - &:global(.navbar__link--active) { - &:after { - content: ""; - position: absolute; - bottom: 2px; - left: 11px; - right: 11px; - height: 2px; - background: var(--ifm-toc-border-color); - display: block; - } - } - &:global(.navbar__link--active), - &.logo { - &:after { - background: var(--color-wave); - } - } - &.logo { - font-weight: bold; - } - } - } -} - -html[data-theme="light"] { - & .siteHeader { - background: white; - } - & .siteNav { - border-top-color: var(--ifm-toc-border-color); - } -} diff --git a/src/theme/Navbar/Layout/styles.module.css b/src/theme/Navbar/Layout/styles.module.css deleted file mode 100644 index e72891a44..000000000 --- a/src/theme/Navbar/Layout/styles.module.css +++ /dev/null @@ -1,7 +0,0 @@ -.navbarHideable { - transition: transform var(--ifm-transition-fast) ease; -} - -.navbarHidden { - transform: translate3d(0, calc(-100% - 2px), 0); -} diff --git a/src/theme/Navbar/MobileSidebar/Header/index.js b/src/theme/Navbar/MobileSidebar/Header/index.js deleted file mode 100644 index b5935488f..000000000 --- a/src/theme/Navbar/MobileSidebar/Header/index.js +++ /dev/null @@ -1,31 +0,0 @@ -import React from 'react'; -import {useNavbarMobileSidebar} from '@docusaurus/theme-common/internal'; -import {translate} from '@docusaurus/Translate'; -// import NavbarColorModeToggle from '@theme/Navbar/ColorModeToggle'; -import IconClose from '@theme/Icon/Close'; -import NavbarLogo from '@theme/Navbar/Logo'; -function CloseButton() { - const mobileSidebar = useNavbarMobileSidebar(); - return ( - - ); -} -export default function NavbarMobileSidebarHeader() { - return ( -
    - - {/* */} - -
    - ); -} diff --git a/src/theme/Navbar/MobileSidebar/Layout/Caret.svg b/src/theme/Navbar/MobileSidebar/Layout/Caret.svg deleted file mode 100644 index 7b6d47cc8..000000000 --- a/src/theme/Navbar/MobileSidebar/Layout/Caret.svg +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - - - diff --git a/src/theme/Navbar/MobileSidebar/Layout/index.js b/src/theme/Navbar/MobileSidebar/Layout/index.js deleted file mode 100644 index ca39b4847..000000000 --- a/src/theme/Navbar/MobileSidebar/Layout/index.js +++ /dev/null @@ -1,112 +0,0 @@ -import React, { useEffect, useState } from "react"; -import clsx from "clsx"; -import { useLocation } from "@docusaurus/router"; -import { useNavbarSecondaryMenu } from "@docusaurus/theme-common/internal"; -import SeqeraMenu from "../SeqeraMenu"; -import Caret from "./Caret.svg" -import styles from "./styles.module.css"; - -function Button({ onClick, children }) { - return ( - - ); -} - -function NavButtons({ currentPanel, setPanel }) { - - // manually add docs title to top of mobile menu - function formatPathname(pathname) { - const segments = pathname.split('/').filter(Boolean); - const first = segments[0]; - if (!first) return 'Home'; - let label = first.replace(/-/g, ' '); - // If the segment contains 'multiqc', capitalize 'QC' - if (/multiqc/i.test(label)) { - label = label.replace(/multiqc/i, 'MultiQC'); - } - if (/platform[-_\s]?api/i.test(pathname)) { - return "Platform API"; - } - // Capitalize the first letter of each word (excluding the already fixed "QC") - label = label - .split(' ') - .map(word => { - if (word === 'QC') return word - return word.charAt(0).toUpperCase() + word.slice(1); - }) - .join(' '); - return label; - } - const pageTitle = formatPathname(location.pathname); - - return ( - <> - {currentPanel === 1 && ( - - )} - {currentPanel === 2 && ( - <> - -
    - {pageTitle} Docs -
    - - )} - - ); -} - -export default function NavbarMobileSidebarLayout({ header, primaryMenu }) { - const level2 = useNavbarSecondaryMenu(); - const [currentPanel, setCurrentPanel] = React.useState(level2.shown ? 2 : 2); - const [mainMenu, setMainMenu] = useState(false); - - useEffect(() => { - setCurrentPanel(level2.shown ? 2 : 1); - }, [level2.shown]); - - function setPanel(index) { - return () => { - if (index !== 2) level2.hide(); - setCurrentPanel(index); - }; - } - - useEffect(() => { - if (location.pathname =='/') { - setMainMenu(false); - } else { - setMainMenu(true); - } - }, [location.pathname]); - - - return ( -
    - {header} -
    -
    -
    - -
    - -
    -
    - - {level2.content} -
    -
    -
    - ); -} diff --git a/src/theme/Navbar/MobileSidebar/Layout/styles.module.css b/src/theme/Navbar/MobileSidebar/Layout/styles.module.css deleted file mode 100644 index 24baa15e2..000000000 --- a/src/theme/Navbar/MobileSidebar/Layout/styles.module.css +++ /dev/null @@ -1,29 +0,0 @@ -.button { - padding: 0.6rem 1.5rem; - font-weight: 400; - background-color: none; -} -html[data-theme="dark"] .button { - background: none; - svg { - filter: invert(100%); - } -} -.caretRotate { - transform: rotate(180deg); -} -.panels { - & > div { - width: 100%; - transition: all 0.5s; - } - &.panel1Active > div { - transform: translateX(0%); - } - &.panel2Active > div { - transform: translateX(-100%); - } - &.panel3Active > div { - transform: translateX(-200%); - } -} diff --git a/src/theme/Navbar/MobileSidebar/PrimaryMenu/index.js b/src/theme/Navbar/MobileSidebar/PrimaryMenu/index.js deleted file mode 100644 index 9c5d0ec06..000000000 --- a/src/theme/Navbar/MobileSidebar/PrimaryMenu/index.js +++ /dev/null @@ -1,27 +0,0 @@ -import React from 'react'; -import {useThemeConfig} from '@docusaurus/theme-common'; -import {useNavbarMobileSidebar} from '@docusaurus/theme-common/internal'; -import NavbarItem from '@theme/NavbarItem'; -function useNavbarItems() { - // TODO temporary casting until ThemeConfig type is improved - return useThemeConfig().navbar.items; -} -// The primary menu displays the navbar items -export default function NavbarMobilePrimaryMenu() { - const mobileSidebar = useNavbarMobileSidebar(); - // TODO how can the order be defined for mobile? - // Should we allow providing a different list of items? - const items = useNavbarItems(); - return ( -
      - {items.map((item, i) => ( - mobileSidebar.toggle()} - key={i} - /> - ))} -
    - ); -} diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Company.jsx b/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Company.jsx deleted file mode 100644 index 959b6deb2..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Company.jsx +++ /dev/null @@ -1,43 +0,0 @@ -import React from "react"; -import Link from "../../../Layout/SeqeraHeader/_shared/Link"; -import styles from "./styles.module.css"; - -import { - AiIcon, - About, - Contact, - Feedback, -} from "../../../Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons"; - -const links = { - company: [ - ["Seqera.io", "/about/", About], - ["Contact us", "/contact-us/", Contact], - ["Submit Feedback", "/feedback/", Feedback], - ], -}; -const Company = ({ toggleMenu }) => { - return ( - - ); -}; - -export default Company; diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Help.jsx b/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Help.jsx deleted file mode 100644 index d06cffda7..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/Help.jsx +++ /dev/null @@ -1,44 +0,0 @@ -import React from "react"; -import Link from "../../../Layout/SeqeraHeader/_shared/Link"; -import styles from "./styles.module.css"; -import { - AiIcon, - Forum, - Nextflow, - Support, -} from "../../../Layout/SeqeraHeader/HeaderDesktop/Submenu/shared/icons"; - -const links = { - help: [ - ["Forum", "https://community.seqera.io", Forum], - ["Support Portal", "https://support.seqera.io", Support], - ["Nextflow Slack", "https://www.nextflow.io/slack-invite.html", Nextflow], - ["Seqera AI", "/ask-ai", AiIcon], - ], -}; - -const Help = ({ toggleMenu }) => { - return ( - - ); -}; - -export default Help; diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/index.jsx b/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/index.jsx deleted file mode 100644 index 535c2246b..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/index.jsx +++ /dev/null @@ -1,56 +0,0 @@ -import React from "react"; -import clsx from "clsx"; -import { motion, AnimatePresence } from "framer-motion"; - -import AngleDown from "../../../Layout/SeqeraHeader/_shared/angle-down.inline.svg"; - -import styles from "./styles.module.css"; - -const Category = ({ - label, - children, - selectedCategory, - setSelectedCategory, -}) => { - const isOpen = selectedCategory === label; - const toggle = () => { - if (isOpen) setSelectedCategory(null); - else setSelectedCategory(label); - }; - - const navVariants = { - enter: { height: 0, opacity: 0 }, - idle: { height: "auto", opacity: 1 }, - exit: { height: 0, opacity: 0 }, - }; - - const transition = { - ease: "easeOut", - duration: 0.3, - }; - - return ( -
    - - - {isOpen && ( - - {children} - - )} - -
    - ); -}; - -export default Category; diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/styles.module.css b/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/styles.module.css deleted file mode 100644 index 3bbb51a9d..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/Category/styles.module.css +++ /dev/null @@ -1,63 +0,0 @@ - - -.menuList { - margin-right: 1.5rem; - list-style: none; - padding: 0; - li a { - font-size: 1rem; - color: var(--color-brand); - text-decoration: none; - } - - li { - margin-bottom: .5rem; - } - } - -.iconItem { - border: 1px solid var(--color-gray-400); - background: white; - border-radius: 4px; - height: 25px; - width: 25px; - padding: 4px; - position: relative; - display: flex; - justify-content: center; - align-items: center; - margin-right: 5px; - &:hover { - border: 1px solid var(--color-brand-600); - } -} - -[data-theme="light"] .submenu { - background: #F1F1F1; - - h3 { - color: var(--color-brand-700); - } -} - -[data-theme="dark"] .submenu { - background: #1c1c1e; - color: #F1F1F1; - a { - color: #F1F1F1; - } - h3 { - color: #F1F1F1; - } - svg { - filter: invert(100%); - } -} - -[data-theme="dark"] .iconItem { - background: #1c1c1e; - border: 1px solid var(--color-gray-600); - svg { - filter: invert(100%); - } -} diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/index.jsx b/src/theme/Navbar/MobileSidebar/SeqeraMenu/index.jsx deleted file mode 100644 index 18f490314..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/index.jsx +++ /dev/null @@ -1,70 +0,0 @@ -import React from "react"; -import { motion, AnimatePresence } from "framer-motion"; -import clsx from "clsx"; -import Help from "./Category/Help"; -import Company from "./Category/Company"; -import NavbarMobilePrimaryMenu from "../PrimaryMenu"; -import styles from "./styles.module.css"; - -const Menu = () => { - const navVariants = { - enter: { y: -20, opacity: 0 }, - enter2: { y: 60, opacity: 0 }, - idle: { y: 0, opacity: 1 }, - exit: { opacity: 0, y: -20, transition: { duration: 0.2, delay: 0 } }, - exit2: { opacity: 0, y: 20, transition: { duration: 0.2, delay: 0 } }, - }; - - const transition = { - ease: "easeOut", - duration: 0.2, - delay: 0.2, - }; - - return ( - <> - - - - -
    -

    Docs

    - -
    - -
    - - -
    -     -     - - ); -}; - -export default Menu; diff --git a/src/theme/Navbar/MobileSidebar/SeqeraMenu/styles.module.css b/src/theme/Navbar/MobileSidebar/SeqeraMenu/styles.module.css deleted file mode 100644 index a7822e5fa..000000000 --- a/src/theme/Navbar/MobileSidebar/SeqeraMenu/styles.module.css +++ /dev/null @@ -1,68 +0,0 @@ -.categories { - margin: -20px -10px 0 -10px; -} - -.button { - justify-content: center; - display: flex; - align-items: center; - height: 30px; - font-weight: 500; - border-radius: 8px; - color: var(--color-brand); - font-size: .9375rem; - line-height: 1; - padding: 0 13px; - text-align: center; - white-space: nowrap; - border: 1px solid var(--color-brand-400); - position: relative; - &:hover { - text-decoration: none; - color: white; - background: var(--color-brand); - border: 1px solid var(--color-brand); - } - &.secondary { - border-color: var(--color-blu); - background: var(--color-blu); - color: white; - transition: all 0.2s; - &:hover { - background-color: var(--color-brand); - border-color: var(--color-brand); - } - &.altStyle { - background-color: rgba(16, 23, 59, 0.8); - } - } -} - -html[data-theme="dark"] .button { - background: var(--color-gray-400); - border-color: var(--color-gray-400); - color: var(--color-brand-1000); - - a { - color: var(--color-brand-1000); - } - &:hover { - background-color: var(--color-gray-900); - border-color: var(--color-gray-900); - color: white; - } - &.secondary { - border-color: var(--color-blu); - background: var(--color-blu); - color: white; - &:hover { - background-color: var(--color-blu-800); - border-color: var(--color-blu-800); - color: white; - } - &.altStyle { - background-color: rgba(16, 23, 59, 0.8); - } - } -} - diff --git a/src/theme/Navbar/MobileSidebar/Toggle/index.js b/src/theme/Navbar/MobileSidebar/Toggle/index.js deleted file mode 100644 index bfe298891..000000000 --- a/src/theme/Navbar/MobileSidebar/Toggle/index.js +++ /dev/null @@ -1,22 +0,0 @@ -import React from 'react'; -import {useNavbarMobileSidebar} from '@docusaurus/theme-common/internal'; -import {translate} from '@docusaurus/Translate'; -import IconMenu from '@theme/Icon/Menu'; -export default function MobileSidebarToggle() { - const {toggle, shown} = useNavbarMobileSidebar(); - return ( - - ); -} diff --git a/src/theme/Navbar/MobileSidebar/index.js b/src/theme/Navbar/MobileSidebar/index.js deleted file mode 100644 index 84d01135c..000000000 --- a/src/theme/Navbar/MobileSidebar/index.js +++ /dev/null @@ -1,21 +0,0 @@ -import React from "react"; -import { - useLockBodyScroll, - useNavbarMobileSidebar, -} from "@docusaurus/theme-common/internal"; -import NavbarMobileSidebarLayout from "@theme/Navbar/MobileSidebar/Layout"; -import NavbarMobileSidebarHeader from "@theme/Navbar/MobileSidebar/Header"; -import NavbarMobileSidebarPrimaryMenu from "@theme/Navbar/MobileSidebar/PrimaryMenu"; -export default function NavbarMobileSidebar() { - const mobileSidebar = useNavbarMobileSidebar(); - useLockBodyScroll(mobileSidebar.shown); - if (!mobileSidebar.shouldRender) { - return null; - } - return ( - } - primaryMenu={} - /> - ); -} diff --git a/src/theme/Navbar/Search/index.js b/src/theme/Navbar/Search/index.js deleted file mode 100644 index 686f73b8d..000000000 --- a/src/theme/Navbar/Search/index.js +++ /dev/null @@ -1,10 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import styles from './styles.module.css'; -export default function NavbarSearch({children, className}) { - return ( -
    - {children} -
    - ); -} diff --git a/src/theme/Navbar/Search/styles.module.css b/src/theme/Navbar/Search/styles.module.css deleted file mode 100644 index a4b8e3c0c..000000000 --- a/src/theme/Navbar/Search/styles.module.css +++ /dev/null @@ -1,53 +0,0 @@ -/* -Workaround to avoid rendering empty search container -See https://github.com/facebook/docusaurus/pull/9385 -*/ - -/* .navbarSearchContainer:not(:has(> *)) { - display: none; -} - -@media (max-width: 996px) { - .navbarSearchContainer { - position: absolute; - right: var(--ifm-navbar-padding-horizontal); - } -} - -@media (min-width: 996px) { - .navbarSearchContainer { - padding: var(--ifm-navbar-item-padding-vertical) - var(--ifm-navbar-item-padding-horizontal); - } - .navbarSearchContainer > button { - width: 200px; - } -} */ - -/** - * Custom - */ - -/* Dark mode */ -/* -html[data-theme="dark"] { - --docsearch-text-color: #f5f6f7; - --docsearch-container-background: rgba(9, 10, 17, 0.8); - --docsearch-modal-background: #15172a; - --docsearch-modal-shadow: inset 1px 1px 0 0 #2c2e40, 0 3px 8px 0 #000309; - --docsearch-searchbox-background: #090a11; - --docsearch-searchbox-focus-background: #000; - --docsearch-hit-color: #bec3c9; - --docsearch-hit-shadow: none; - --docsearch-hit-background: #090a11; - --docsearch-key-gradient: linear-gradient(-26.5deg, #565872, #31355b); - --docsearch-key-shadow: - inset 0 -2px 0 0 #282d55, inset 0 0 1px 1px #51577d, - 0 2px 2px 0 rgba(3, 4, 9, 0.3); - --docsearch-footer-background: #1e2136; - --docsearch-footer-shadow: - inset 0 1px 0 0 rgba(73, 76, 106, 0.5), 0 -4px 8px 0 rgba(0, 0, 0, 0.2); - --docsearch-logo-color: #fff; - --docsearch-muted-color: #7f8497; -} -*/ \ No newline at end of file diff --git a/src/theme/NotFound/Content/index.js b/src/theme/NotFound/Content/index.js deleted file mode 100644 index 026cc3d94..000000000 --- a/src/theme/NotFound/Content/index.js +++ /dev/null @@ -1,34 +0,0 @@ -import React from 'react'; -import clsx from 'clsx'; -import Translate from '@docusaurus/Translate'; -import Heading from '@theme/Heading'; -import Button from "../../../components/Button"; - -export default function NotFoundContent({className, path}) { - return ( -
    -
    -
    - - - Page not found - {path && `: ` + path} - -

    - - 404: Something has gone wrong with our dataflow. The page you are looking for does not exist. - -

    -

    - -

    -
    -
    -
    - ); -} - diff --git a/src/theme/NotFound/index.js b/src/theme/NotFound/index.js deleted file mode 100644 index d8122f5cb..000000000 --- a/src/theme/NotFound/index.js +++ /dev/null @@ -1,19 +0,0 @@ -import React from 'react'; -import {translate} from '@docusaurus/Translate'; -import {PageMetadata} from '@docusaurus/theme-common'; -import Layout from '@theme/Layout'; -import NotFoundContent from '@theme/NotFound/Content'; -export default function Index({ location: { pathname } }) { - const title = translate({ - id: 'theme.NotFound.title', - message: `Page not found: ${pathname}`, - }); - return ( - <> - - - - - - ); -} diff --git a/src/theme/_TEMPApiItem/index.js b/src/theme/_TEMPApiItem/index.js deleted file mode 100644 index ab03c74b6..000000000 --- a/src/theme/_TEMPApiItem/index.js +++ /dev/null @@ -1,16 +0,0 @@ -import React from 'react'; -import ApiItem from '@theme-original/ApiItem'; - -export default function ApiItemWrapper(props) { - return ( - <> - - - ); -} - -const blockedLangs = ['objectivec', 'ocaml', 'csharp', 'dart', 'kotlin', 'c', 'php', 'swift']; - -const cleanExamples = props.examples.filter(ex => - !blockedLangs.includes(ex.lang.toLowerCase()) -); diff --git a/src/theme/prism-include-languages.js b/src/theme/prism-include-languages.js deleted file mode 100644 index f5ae1bb8f..000000000 --- a/src/theme/prism-include-languages.js +++ /dev/null @@ -1,31 +0,0 @@ -import siteConfig from '@generated/docusaurus.config'; -export default function prismIncludeLanguages(PrismObject) { - const { - themeConfig: {prism}, - } = siteConfig; - const {additionalLanguages} = prism; - // Prism components work on the Prism instance on the window, while prism- - // react-renderer uses its own Prism instance. We temporarily mount the - // instance onto window, import components to enhance it, then remove it to - // avoid polluting global namespace. - // You can mutate PrismObject: registering plugins, deleting languages... As - // long as you don't re-assign it - const PrismBefore = globalThis.Prism; - globalThis.Prism = PrismObject; - additionalLanguages.forEach((lang) => { - if (lang === 'php') { - // eslint-disable-next-line global-require - require('prismjs/components/prism-markup-templating.js'); - } - // eslint-disable-next-line global-require, import/no-dynamic-require - require(`prismjs/components/prism-${lang}`); - }); - // Add Nextflow language support - // eslint-disable-next-line global-require - require('./prism-nextflow'); - // Clean up and eventually restore former globalThis.Prism object (if any) - delete globalThis.Prism; - if (typeof PrismBefore !== 'undefined') { - globalThis.Prism = PrismObject; - } -} diff --git a/src/theme/prism-nextflow.js b/src/theme/prism-nextflow.js deleted file mode 100644 index 188867206..000000000 --- a/src/theme/prism-nextflow.js +++ /dev/null @@ -1,24 +0,0 @@ -(function (Prism) { - Prism.languages.nextflow = Prism.languages.extend('groovy', { - 'keyword': /\b(?:as|assert|boolean|byte|catch|char|def|double|else|enum|float|if|in|instanceof|int|long|new|return|short|throw|try|void|process|workflow|input|output|exec|shell|script|stub|include|from)\b/, - 'string': { - pattern: /"""(?:[^\\]|\\[\s\S])*?"""|'''(?:[^\\]|\\[\s\S])*?'''|'(?:\\.|[^\\'\r\n])*'|"(?:\\.|[^\\"\r\n])*"/, - greedy: true - }, - 'operator': { - pattern: /(^|[^.])(?:~|==?~?|\?[.:]?|\*(?:[.=]|\*=?)?|\.[@&]|\.\.<|\.\.(?!\.)|-[-=>]?|\+[+=]?|!=?|<(?:<=?|=>?)?|>(?:>>?=?|=)?|&[&=]?|\|[|=]?|\/=?|\^=?|%=?)/, - lookbehind: true - }, - 'punctuation': /\.+|[{}[\];(),:$]/ - }); - - // Add support for Nextflow-specific directives - Prism.languages.insertBefore('nextflow', 'keyword', { - 'directive': { - pattern: /(?:^|\n)\s*(?:process|workflow|exec|shell|script|stub|container|conda|module|include|from|publishDir|input|output):/, - lookbehind: true, - alias: 'keyword' - } - }); - -}(Prism)); diff --git a/src/typings.d.ts b/src/typings.d.ts deleted file mode 100644 index 39b83432d..000000000 --- a/src/typings.d.ts +++ /dev/null @@ -1,4 +0,0 @@ -interface Window { - gtag: (command: string, ...args: any[]) => void; - posthog: any; -} diff --git a/static/_redirects b/static/_redirects index 43c2ae4d2..81bfa95d7 100644 --- a/static/_redirects +++ b/static/_redirects @@ -52,6 +52,9 @@ /platform-enterprise/*/cli/* /platform-cli 301 /platform-enterprise/:version/cli/* /platform-cli 301 +# Redirect mcp to overview page not platform-cloud +/platform-cloud/seqera-mcp /platform-cloud/seqera-mcp/overview 301 + # Remove version from /platform-cloud paths /platform-cloud/:version/* /platform-cloud/:splat diff --git a/static/fonts/degular/Degular-Black.woff b/static/fonts/degular/Degular-Black.woff deleted file mode 100644 index dfe530df1..000000000 Binary files a/static/fonts/degular/Degular-Black.woff and /dev/null differ diff --git a/static/fonts/degular/Degular-Black.woff2 b/static/fonts/degular/Degular-Black.woff2 deleted file mode 100644 index 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differ diff --git a/static/fonts/degular/Degular-ThinItalic.woff2 b/static/fonts/degular/Degular-ThinItalic.woff2 deleted file mode 100644 index 6bcb1ee72..000000000 Binary files a/static/fonts/degular/Degular-ThinItalic.woff2 and /dev/null differ diff --git a/static/fonts/degular/main.css b/static/fonts/degular/main.css deleted file mode 100644 index 352f69620..000000000 --- a/static/fonts/degular/main.css +++ /dev/null @@ -1,55 +0,0 @@ -@font-face { - font-family: "Degular"; - src: url("Degular-Thin.woff2") format("woff2"); - src: url("Degular-Thin.woff") format("woff"); - font-weight: 200; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Light.woff2") format("woff2"); - src: url("Degular-Light.woff") format("woff"); - font-weight: 300; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Regular.woff2") format("woff2"); - src: url("Degular-Regular.woff") format("woff"); - font-weight: 400; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Medium.woff2") format("woff2"); - src: url("Degular-Medium.woff") format("woff"); - font-weight: 500; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Semibold.woff2") format("woff2"); - src: url("Degular-Semibold.woff") format("woff"); - font-weight: 600; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Bold.woff2") format("woff2"); - src: url("Degular-Bold.woff") format("woff"); - font-weight: 700; - font-style: normal; -} - -@font-face { - font-family: "Degular"; - src: url("Degular-Black.woff2") format("woff2"); - src: url("Degular-Black.woff") format("woff"); - font-weight: 800; - font-style: normal; -} diff --git a/static/fonts/inter/Inter-Black.eot b/static/fonts/inter/Inter-Black.eot deleted file mode 100644 index 31a25b993..000000000 Binary files a/static/fonts/inter/Inter-Black.eot and /dev/null differ diff --git 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b/static/img/wave-icon.svg deleted file mode 100644 index 6fc6c358a..000000000 --- a/static/img/wave-icon.svg +++ /dev/null @@ -1,13 +0,0 @@ - - - - - - - - - - - - - diff --git a/tailwind.config.js b/tailwind.config.js deleted file mode 100644 index 61e818eee..000000000 --- a/tailwind.config.js +++ /dev/null @@ -1,243 +0,0 @@ -const getSpacing = () => { - const space = 4; - const increments = 112; - const values = []; - for (let i = 1; i < increments; i++) { - values.push({ [i]: `${i * space}px` }); - } - return values.reduce((acc, curr) => ({ ...acc, ...curr }), {}); -}; - -module.exports = { - content: ["src/**/*.jsx", "src/**/*.tsx"], - darkMode: ["class", '[data-theme="dark"]'], - theme: { - screens: { - sm: "640px", - md: "996px", // set to match docusaurus default breakpoint - lg: "1024px", - xl: "1280px", - }, - fontFamily: { - title: ["Degular", "Helvetica", "sans-serif"], - display: ["Inter", "Helvetica", "sans-serif"], - body: ["Inter", "Helvetica", "sans-serif"], - }, - fontSize: { - xs: ["12px", "18px"], - sm: ["14px", "21px"], - base: ["16px", "24px"], - lg: ["18px", "26px"], - xl: ["24px", "32px"], - "2xl": ["28px", "1"], - "3xl": ["32px", "1"], - "4xl": ["40px", "1"], - "5xl": ["48px", "1"], - "6xl": ["56px", "1"], - "7xl": ["60px", "1"], - "8xl": ["64px", "1"], - "9xl": ["68px", "1"], - }, - extend: { - colors: { - nextflow: { - 100: "#E2F7F3", - 200: "#B6ECE2", - 300: "#86E0CE", - 400: "#56D3BA", - 500: "#31C9AC", - 600: "#0DC09D", - 700: "#0CAE8E", - 800: "#0A967B", - 900: "#087F68", - 1000: "#065647", - DEFAULT: "#0DC09D", - }, - wave: { - 100: "#E8F2FF", - 200: "#C5DFFE", - 300: "#9ECAFE", - 400: "#77B5FE", - 500: "#5AA5FD", - 600: "#3D95FD", - 700: "#3787E5", - 800: "#3074C5", - 900: "#2863A7", - 1000: "#1B4372", - DEFAULT: "#3D95FD", - }, - fusion: { - 100: "#FEEDEC", - 200: "#FED2D0", - 300: "#FDB4B1", - 400: "#FC9592", - 500: "#FB7F7A", - 600: "#FA6863", - 700: "#E25E5A", - 800: "#C3514D", - 900: "#A64541", - 1000: "#712F2C", - DEFAULT: "#FA6863", - }, - multiqc: { - 100: "#FDF0E9", - 200: "#FBD9C8", - 300: "#F8C0A3", - 400: "#F5A67E", - 500: "#F39362", - 600: "#F18046", - 700: "#DA743F", - 800: "#BC6437", - 900: "#A0552F", - 1000: "#6C3A20", - DEFAULT: "#F18046", - }, - brand: { - 100: "#F3F3F4", - 200: "#E8E7E9", - 300: "#D0CFD4", - 400: "#B9B7BE", - 500: "#A29FA8", - 600: "#8A8792", - 700: "#736F7D", - 800: "#5C5767", - 900: "#453F51", - 1000: "#2D273C", - 1100: "#160F26", - 1200: "#151121", - 1300: "#141024", - 1400: "#110D1D", - DEFAULT: "#160F26", - }, - gray: { - 100: "#F7F7F7", - 200: "#EAEBEB", - 300: "#DDDEDE", - 400: "#CFD0D1", - 500: "#C4C6C7", - 600: "#BABCBD", - 700: "#A8AAAB", - 800: "#919393", - 900: "#7B7B7B", - 1000: "#545555", - }, - product: { - 100: "#EAE8F1", - 200: "#CBC6DD", - 300: "#A9A1C6", - 400: "#867BAF", - 500: "#6C5E9D", - 600: "#52428C", - 700: "#4A3C7F", - 800: "#40346D", - 900: "#362C5D", - 1000: "#251E3F", - }, - blu: { - 100: "#E8EBFC", - 200: "#C6CCF8", - 300: "#A1ABF3", - 400: "#7B89EE", - 500: "#5E6FEB", - 600: "#4256E7", // Replaces sl-blue - 700: "#3C4ED1", - 800: "#3443B4", - 900: "#2C3999", - 1000: "#1E2768", - DEFAULT: "#4256E7", - }, - }, - borderRadius: { - sm: "4px", - md: "8px", - full: "9999px", - }, - margin: { - "1/12": "8.333333%", - "2/12": "16.666667%", - "3/12": "25%", - "4/12": "33.333333%", - "5/12": "41.666667%", - "6/12": "50%", - "7/12": "58.333333%", - "8/12": "66.666667%", - "9/12": "75%", - "10/12": "83.333333%", - "11/12": "91.666667%", - "-1/12": "-8.333333%", - "-2/12": "-16.666667%", - "-3/12": "-25%", - "-4/12": "-33.333333%", - "-5/12": "-41.666667%", - "-6/12": "-50%", - "-7/12": "-58.333333%", - "-8/12": "-66.666667%", - "-9/12": "-75%", - "-10/12": "-83.333333%", - "-11/12": "-91.666667%", - }, - flex: { - "1/1": "0 0 100%", - "1/12": "0 0 8.333333%", - "2/12": "0 0 16.666667%", - "3/12": "0 0 25%", - "4/12": "0 0 33.333333%", - "5/12": "0 0 41.666667%", - "6/12": "0 0 50%", - "7/12": "0 0 58.333333%", - "8/12": "0 0 66.666667%", - "9/12": "0 0 75%", - "10/12": "0 0 83.333333%", - "11/12": "0 0 91.666667%", - "1/5": "0 0 20%", - }, - height: { - 18: "4.5rem", - }, - minWidth: { - "1/12": "8.333333%", - "2/12": "16.666667%", - "3/12": "25%", - "4/12": "33.333333%", - "5/12": "41.666667%", - "6/12": "50%", - "7/12": "58.333333%", - "8/12": "66.666667%", - "9/12": "75%", - "10/12": "83.333333%", - "11/12": "91.666667%", - "1/5": "20%", - }, - shadow: { - default: "0px 5px 10px rgba(0, 0, 0, 0.1)", - xl: "0 2px 21px 11px rgba(0,0,0,0.05)", - hover: "0 0 0 1px rgba(0, 0, 0, 0.65)", - }, - spacing: getSpacing(), - zIndex: { - header: 100, - sidebar: 150, - }, - }, - }, - plugins: [ - function ({ addBase, theme }) { - function extractColorVars(colorObj, colorGroup = "") { - return Object.keys(colorObj).reduce((vars, colorKey) => { - const value = colorObj[colorKey]; - - const newVars = - typeof value === "string" - ? { [`--color${colorGroup}-${colorKey}`]: value } - : extractColorVars(value, `-${colorKey}`); - - return { ...vars, ...newVars }; - }, {}); - } - - addBase({ - html: extractColorVars(theme("colors")), - }); - }, - ], -};