diff --git a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
index fed305307491..a8767c57a2af 100644
--- a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
+++ b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
@@ -208,7 +208,6 @@ private void applyConnectionDetails(FlywayConnectionDetails connectionDetails, D
 		 * @param configuration the configuration
 		 * @param properties the properties
 		 */
-		@SuppressWarnings("removal")
 		private void configureProperties(FluentConfiguration configuration, FlywayProperties properties) {
 			// NOTE: Using method references in the mapper methods can break
 			// back-compatibility (see gh-38164)
@@ -263,8 +262,7 @@ private void configureProperties(FluentConfiguration configuration, FlywayProper
 			map.from(properties.isBaselineOnMigrate())
 				.to((baselineOnMigrate) -> configuration.baselineOnMigrate(baselineOnMigrate));
 			map.from(properties.isCleanDisabled()).to((cleanDisabled) -> configuration.cleanDisabled(cleanDisabled));
-			map.from(properties.isCleanOnValidationError())
-				.to((cleanOnValidationError) -> configuration.cleanOnValidationError(cleanOnValidationError));
+			configureCleanOnValidationError(configuration, properties);
 			map.from(properties.isGroup()).to((group) -> configuration.group(group));
 			map.from(properties.isMixed()).to((mixed) -> configuration.mixed(mixed));
 			map.from(properties.isOutOfOrder()).to((outOfOrder) -> configuration.outOfOrder(outOfOrder));
@@ -309,6 +307,16 @@ private void configureProperties(FluentConfiguration configuration, FlywayProper
 				.to((detectEncoding) -> configuration.detectEncoding(detectEncoding));
 		}
 
+		@SuppressWarnings("removal")
+		private void configureCleanOnValidationError(FluentConfiguration configuration, FlywayProperties properties) {
+			try {
+				configuration.cleanOnValidationError(properties.isCleanOnValidationError());
+			}
+			catch (NoSuchMethodError ex) {
+				// Flyway >= 12.0
+			}
+		}
+
 		private void configureExecuteInTransaction(FluentConfiguration configuration, FlywayProperties properties,
 				PropertyMapper map) {
 			try {
diff --git a/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/Flyway120AutoConfigurationTests.java b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/Flyway120AutoConfigurationTests.java
new file mode 100644
index 000000000000..403f6420f2de
--- /dev/null
+++ b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/Flyway120AutoConfigurationTests.java
@@ -0,0 +1,52 @@
+/*
+ * Copyright 2012-present the original author or authors.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      https://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.springframework.boot.autoconfigure.flyway;
+
+import org.flywaydb.core.Flyway;
+import org.flywaydb.core.api.Location;
+import org.junit.jupiter.api.Test;
+
+import org.springframework.boot.autoconfigure.AutoConfigurations;
+import org.springframework.boot.autoconfigure.jdbc.EmbeddedDataSourceConfiguration;
+import org.springframework.boot.test.context.runner.ApplicationContextRunner;
+import org.springframework.boot.testsupport.classpath.ClassPathOverrides;
+
+import static org.assertj.core.api.Assertions.assertThat;
+
+/**
+ * Tests for {@link FlywayAutoConfiguration} with Flyway 12.0.
+ *
+ * @author Dmytro Nosan
+ */
+@ClassPathOverrides("org.flywaydb:flyway-core:12.0.0")
+class Flyway120AutoConfigurationTests {
+
+	private final ApplicationContextRunner contextRunner = new ApplicationContextRunner()
+		.withConfiguration(AutoConfigurations.of(FlywayAutoConfiguration.class))
+		.withPropertyValues("spring.datasource.generate-unique-name=true");
+
+	@Test
+	void defaultFlyway() {
+		this.contextRunner.withUserConfiguration(EmbeddedDataSourceConfiguration.class).run((context) -> {
+			assertThat(context).hasSingleBean(Flyway.class);
+			Flyway flyway = context.getBean(Flyway.class);
+			assertThat(flyway.getConfiguration().getLocations())
+				.containsExactly(new Location("classpath:db/migration"));
+		});
+	}
+
+}