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  1. KGD KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    R 21 16

  2. GUS-LD GUS-LD Public

    Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium

    R 4 2

  3. snpGBS snpGBS Public

    A simple bioinformatics workflow to identify single nucleotide polymorphism (SNP) from Genotyping-by-Sequencing (GBS) data.

    Jupyter Notebook 2 3

  4. data_prism data_prism Public

    R 1

  5. tardis tardis Public

    tardis

    Python 1

  6. Benchmarks Benchmarks Public

    This repository includes benchmarks that will be used to ensure the fit for purpose and to measure the performance of the Scientific Compute Platform in AgResearch.

    R 1

Repositories

Showing 10 of 54 repositories
  • redun_psij Public

    PSI/J Executor for Redun

    AgResearch/redun_psij’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Dec 12, 2025
  • gbs_prism Public

    refactored GBS processing

    AgResearch/gbs_prism’s past year of commit activity
    Python 0 0 12 0 Updated Dec 12, 2025
  • redun.nix Public

    A flake package for redun

    AgResearch/redun.nix’s past year of commit activity
    Nix 0 0 0 0 Updated Nov 14, 2025
  • tassel3 Public

    Software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.

    AgResearch/tassel3’s past year of commit activity
    Java 0 LGPL-2.1 0 1 0 Updated Nov 14, 2025
  • KGD Public

    Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment

    AgResearch/KGD’s past year of commit activity
    R 21 GPL-2.0 16 8 0 Updated Oct 28, 2025
  • MIE Public

    Methane Index Explorer (MIE): Estimating Response to Selection for Methane Emissions

    AgResearch/MIE’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 18, 2025
  • redun Public Forked from insitro/redun

    Yet another redundant workflow engine

    AgResearch/redun’s past year of commit activity
    Python 0 Apache-2.0 54 0 0 Updated Oct 16, 2025
  • emacs.d Public archive

    Local tweaks to Steve Purcell's Emacs configuration

    AgResearch/emacs.d’s past year of commit activity
    Emacs Lisp 0 BSD-2-Clause 0 0 0 Updated Aug 5, 2025
  • genomics-prediction-app Public

    Interactive Shiny app for genomic prediction analysis

    AgResearch/genomics-prediction-app’s past year of commit activity
    R 0 0 0 0 Updated Jun 29, 2025
  • wgs_prism Public

    Production and q/c for wgs sequencing runs

    AgResearch/wgs_prism’s past year of commit activity
    Python 0 1 0 0 Updated Jun 18, 2025

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