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Add files via upload #8

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Add files via upload #8

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19 changes: 19 additions & 0 deletions bed_file.py
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Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
import sys

def bed_parser(bfile):
output_data = []
with open(bfile) as bed_data:
for line in bed_data.input():
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@AleksandrSl AleksandrSl Oct 13, 2018

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Input can be omitted

try:
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@AleksandrSl AleksandrSl Oct 13, 2018

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Inconsistent indentation

line = bed_data.stdin.readline()
if not line:
break
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@AleksandrSl AleksandrSl Oct 13, 2018

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Don't really understand what this code do )
To read file usually you do:

with open(file) as in_f:
    for line in in_f:
        do_what_you_want_with_line(line)

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@DariaGorbach DariaGorbach Oct 13, 2018 •
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it's supposed to be a verification, whether file contains lines or not

return
for line in bed_data.input():
if len(bed_data) < 3:
break
else:
continue
for element in range(len(bed_data)):
output_data.append(turple(element[0:5]))
return output_data