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Check for removed or modified input files throughout

Status: Open.

#1142 In AlexsLemonade/scpca-nf;

· jashapiro opened on Dec 22, 2025

Workflow should not fail if infercnv reference cells can not be determined

Status: Open.

#1127 In AlexsLemonade/scpca-nf;

· jashapiro opened on Nov 26, 2025

Update internal instructions for running workflow

Status: Open.

#1121 In AlexsLemonade/scpca-nf;

· jashapiro opened on Nov 20, 2025

Only show changes > 0.00% in the metrics report

Status: Open.

#1115 In AlexsLemonade/scpca-nf;

· allyhawkins opened on Nov 17, 2025

Refactor script for adding cell types to SCEs and counting reference cells

Status: Open.

#1101 In AlexsLemonade/scpca-nf;

· allyhawkins opened on Nov 11, 2025

Future thought: Combine reference cells for different diagnoses in multiplexed libraries

Status: Open.

#1098 In AlexsLemonade/scpca-nf;

· sjspielman opened on Nov 10, 2025

Keep track of scpca-nf style choices

Status: Open.

#1073 In AlexsLemonade/scpca-nf;

· sjspielman opened on Oct 23, 2025

[BUG] Error handling 10x v2.1 files

bugSomething isn't workingSomething isn't working

Status: Open.

#1041 In AlexsLemonade/scpca-nf;

· jashapiro opened on Sep 24, 2025

Create workflow to build Docker images tagged by version

Status: Open.

#997 In AlexsLemonade/scpca-nf;

· jashapiro opened on Sep 4, 2025

Future idea: Update handling for SingleR references

Status: Open.

#906 In AlexsLemonade/scpca-nf;

· allyhawkins opened on Jun 30, 2025

Add GHA to file an issue to create a cavatica release when a new version is tagged

Status: Open.

#894 In AlexsLemonade/scpca-nf;

· jashapiro opened on Jun 16, 2025

Create Docker images on cavatica

Status: Open.

#859 In AlexsLemonade/scpca-nf;

· jashapiro opened on Apr 23, 2025