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Expose rendered-to-SCKAN node mappings via pathways. #175

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Expose rendered-to-SCKAN node mappings via pathways. #175

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21 changes: 20 additions & 1 deletion mapmaker/properties/pathways.py
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Original file line number Diff line number Diff line change
Expand Up @@ -128,6 +128,7 @@ def __init__(self):
self.__node_phenotypes = dict()
self.__forward_connections = set()
self.__node_nerves = set()
self.__node_mappings = set()

@property
def as_dict(self) -> dict[str, Any] :
Expand All @@ -142,7 +143,8 @@ def as_dict(self) -> dict[str, Any] :
'connectivity': list(self.__connectivity),
'node-phenotypes': self.__node_phenotypes,
'forward-connections': list(self.__forward_connections),
'node-nerves': list(self.__node_nerves)
'node-nerves': list(self.__node_nerves),
'node-mappings': list(self.__node_mappings)
}
if len(self.__centrelines):
result['centrelines'] = list(self.__centrelines)
Expand Down Expand Up @@ -239,6 +241,17 @@ def extend_node_nerves(self, node_nerves: list[tuple]):
"""
self.__node_nerves.update(node_nerves)

def extend_node_mappings(self, node_mappings: list[tuple]):
"""
Associate rendered node mapping with the path.

Arguments:
----------
node_mappings
Rendered node_mappings
"""
self.__node_mappings.update(node_mappings)

#===============================================================================

class Route:
Expand Down Expand Up @@ -359,6 +372,11 @@ def list_to_tuple(obj):
'node_nerves': [
list_to_tuple(n) for n in connectivity_graph.graph.get('nerves', [])
if list_to_tuple(n) in available_nodes
],
'node_mappings': [
# mapping from rendered node to knowledge node
(list_to_tuple(connectivity_graph.nodes[node]['node']), list_to_tuple(node))
for node in connectivity_graph.nodes
]
}
return rendered_data
Expand All @@ -382,6 +400,7 @@ def add_connectivity(self, path_id: str, line_geojson_ids: list[int],
resolved_path.extend_node_phenotypes(rendered_data['node_phenotypes'])
resolved_path.extend_forward_connections(rendered_data['forward_connections'])
resolved_path.extend_node_nerves(rendered_data['node_nerves'])
resolved_path.extend_node_mappings(rendered_data['node_mappings'])
if centrelines is not None:
resolved_path.add_centrelines(centrelines)

Expand Down