AnyPyTools v1.20.4

What's Changed

• Fix crash with pytest plugin when saving output to h5 files.
• Fixed a bug where ctrl-c events were not propagated and were silenced. This
  fixes an issue where using AnyPyTools in tools liek pytest or snakemake made
  it difficult to interrupt the process.

AnyPyTools v.1.20.2

What's Changed

• rollback automatic detection of snakemake env by @melund in #132
• fix: Ensure ctrl-c are not suppressed by @melund in #134

Full Changelog: 1.20.2...1.20.3

AnyPyTools v.1.20.2

• Fixed a deprecation warning from the pytest plugin, and enable pytest 9 support.

AnyPyTools v. 1.20.1

• Fixed an issue with AnyPyTools when running directly in the main thread
  of the snakemake workflow tool (i.e., directly in the snakefile). This fix forces
  AnyPyTools to use the standard Python subprocess module when running in snakemake.

AnyPyTools v. 1.20

• Fixed a problem that prevented multiple AnyPyTools instances from running
  simultaneously in the same process. Previously, other running AnyBody instances
  were shut down when the first AnyPyProcess.start_macro() call finished.

AnyPyTools v.1.19.2

AnyPyTools v.1.19.2

• Fixed missing widget information is user-guide documentation.

1.19.1

AnyPyTools v.1.19.1

• Fixed minor formatting issues in documentation.

AnyPyTools v1.19

Changed:

• The results.to_dataframe() no longer returns the special task_* (meta data) in the output columns.
  To get the extra task info use results.to_dataframe(*, include_task_info=True)
• The documentation page updated.

Added:

• New macro_commands.ExtendOutput() helper macro that can add arbitrary values
  to the results output. This allows adding values that don't need to exist as
  variables in the AnyBody model. This is useful for adding extra metadata that will
  appear in the results output when creating the macros.

  macro = [
    mc.Load("MyModel.main.any"),
    mc.ExtendOutput("SubjectID", "S001"),
    mc.ExtendOutput("SubjectHeight", "1.8"),
  ]
  results = app.start_macro(macro)
  assert results[0]["SubjectID"] == "S001"
  assert results[0]["SubjectHeight"] == 1.8

• results.to_dataframe() has a new argument
  exclude_task_info which can exclude task information (variables starting
  with 'task_') when exporting results to a dataframe

AnyPyTools v1.18

Added:

• New macro_commands.Export() helper class that can save output with custom names.
  Similar to the "Dump" command, but allows variables to be saved with arbitrary names.

  See the following example:

  macro = [
    mc.Load("MyModel.main.any"),
    mc.RunOperation("MyModel.Study.Kinematics"),
    mc.Export("Main.Study.Output.EKin", "NewShortName"),
  ]
  results = app.start_macro(macro)

  The Main.Study.Output.EKin variable will be available in the results as results[0]['NewShortName'] instead of
  using the full variable name.

  This also allows the same variable to be exported multiple times during a
  single simulation with different names in the output. This was not possible
  with the "Dump" command, as only the last exported variable would be available in the
  results.

Changed:

• When exporting a whole folder hierarchy, the folders themselves will no longer
  appear in the results as Main.MyFolder = "...". Instead, only actual values
  and strings will be included in the output.
• AnyPyTools now requires a minimum of Python 3.10.
• The helper macro class "OperationRun" has been renamed to "RunOperation". The old name still works for backwards compatibility.

AnyPyTools v.1.17.0

Changed:

• Temporary macro files *.anymcr are now always deleted after a run.