Fastx

Fastx is an ultrafast toolkit for manipulating FASTA/Q file.

Features

• Ultrafast
• Seamlessly parsing both FASTA and FASTQ formats
• Support both single-end and paired-end FASTA/Q files
• Parsing by number of bases or number of reads(head, sample, split)

Build

git clone --recursive git@github.com:Archieyoung/fastx.git
cd fastx
mkdir build && cd build
cmake .. && make -j

You can find the executable fastx in build/bin.

Usage

./fastx 
fastx v0.3.2

  fasta/fastq tool kit.

Usage: fastx <command> <arguments>

Commands:
  head           head sequences
  sample         subsample sequences
  split          split fasta/fastq files.
  subseq         extract subsequences of fasta/fastq

License

MIT License