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ziadbkh merged 1 commit into from
Aug 26, 2025
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Add updated kraken2 databases #45

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16 changes: 15 additions & 1 deletion if89.md
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Expand Up @@ -122,7 +122,7 @@ The list of tools available through the Australian BioCommons Shared Tools and W
Some of the databases required by different bioinformatics software tools are made available through the if89 project.
They are located at <code>/g/data/if89/data_library</code>. You can request other databases to be included by [contacting us](https://australianbiocommons.github.io/ables/contact-us/).

A list of the currently available (`as of 25 Jan 2023`) databases is included below:
A list of the currently available (`as of 25 Aug 2025`) databases is included below:

<div class="accordion" id="accordion-if89-ds">
<div class="accordion-item">
Expand Down Expand Up @@ -221,6 +221,20 @@ A list of the currently available (`as of 25 Jan 2023`) databases is included be
<td>Kraken2 pre-built index for RefSeq database (archaea, bacteria, viral, plasmid, human, protozoa & fungi) plus UniVec_Core.
</td>
</tr>
<tr>
<td>Kraken2</td>
<td><a href="https://benlangmead.github.io/aws-indexes/k2"> Kraken 2, KrakenUniq and Bracken indexes </a></td>
<td> 9 Jun 2025 </td>
<td><code>kraken2/09062025/k2_core_nt</code></td>
<td>Kraken2 Very large collection, inclusive of GenBank, RefSeq, TPA and PDB.</td>
</tr>
<tr>
<td>Kraken2</td>
<td><a href="https://benlangmead.github.io/aws-indexes/k2"> Kraken 2, KrakenUniq and Bracken indexes </a></td>
<td> 9 Jun 2025 </td>
<td><code>kraken2/09062025/k2_standard</code></td>
<td>Kraken2 pre-built "standard" database, includes RefSeq archaea, bacteria, viral, plasmid, human, plus UniVec_Core.</td>
</tr>
<tr>
<td>Dfam</td>
<td><a href="https://www.dfam.org/home"> Dfam </a></td>
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