Data Organization Tool

Description

Tool for the Kinematrix project, used to organize the data into the required arborescence.

How to run

After installing the required libraries (via pip install -r requirements.txt), launch the Window.py file.

Parameters

• Side keyword: keyword contained only in the name of the side view CSV files

• Ventral keyword: keyword contained only in the name of the ventral view CSV files

• X name delimiters: Values just before and just after the name of the X in all the file names, used to extract it

Arborescence created

Target folder
    |- Group 1
    |    |----- Timepoint 1
    |    |        |--------- Side view
    |    |        |            |---Mouse 1 run 1 (.csv)
    |    |        |            |---Mouse 1 run 2 (.csv)
    |    |        |            ...
    |    |        |--------- Ventral view
    |    |        |            |---Mouse 1 run 1 (.csv)
    |    |        |            |---Mouse 1 run 2 (.csv)
    |    |        |            ...
    |    |        |--------- Video
    |    |                    |---Mouse 1 run 1 (.csv)
    |    |                    |---Mouse 1 run 2 (.csv)
    |    |                    ...
    |    |
    |    |----- Timepoint 2
    |            ...
    |            
    |- Group 2
        ...

Packaging into an executable

To 'build' the project (ie package into a frozen executable), pyinstaller can be used.

A virtual environment with all the libraries and dependencies has to be created (.venv folder). See How to run for dependencies installation.

Then, the following commands creates the executable in the "dist" folder.

Windows pyinstaller.exe -c --onefile --icon="./src/Resources/Images/Logo.ico" --paths .\.venv\Lib\site-packages\ -n Kinematrix-DataOrganizationTool .\src\Window.py