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Does ONCOCNV work with probe base library designated BAM files

Status: Open.

#16 In BoevaLab/ONCOCNV;

· shahgen opened on Dec 4, 2024

Raw data unavailable

Status: Open.

#15 In BoevaLab/ONCOCNV;

· valeandri opened on Feb 23, 2024

Queries on applying ONCOCNV on Exome Seq Data

Status: Open.

#14 In BoevaLab/ONCOCNV;

· vyomeshj209 opened on Jan 26, 2022

Error in if (length(which(observations == 0))/length(observations) > 0.3) { : missing value where TRUE/FALSE needed

Status: Open.

#13 In BoevaLab/ONCOCNV;

· mishraa31 opened on Jan 19, 2022

Error in t.test.default((values)/sigma[indLargeSeg], mu = 0) : not enough 'x' observations Calls: t.test -> t.test.default In addition: There were 50 or more warnings (use warnings() to see the first 50) Execution halted

Status: Open.

#12 In BoevaLab/ONCOCNV;

· ruochenj opened on Jun 23, 2021

Running ONCOCNV gets different copy number prediction / p value each time

Status: Open.

#11 In BoevaLab/ONCOCNV;

· ruochenj opened on Jun 23, 2021

Error in mvnX when running processSamples.R of OncoCNV

Status: Open.

#10 In BoevaLab/ONCOCNV;

· mwarrier123 opened on Dec 5, 2019

no output from ONCOCNV_getCounts.pl

Status: Open.

#9 In BoevaLab/ONCOCNV;

· ramakrishnas opened on Sep 30, 2019

understanding the output of the tool

Status: Open.

#8 In BoevaLab/ONCOCNV;

· sbaheti opened on Mar 28, 2019

Usability on large sample sizes

Status: Open.

#7 In BoevaLab/ONCOCNV;

· rsteinfe1 opened on Jun 14, 2018

Problem preping stats from bam files ONCOCNV_getCounts.pl line 450

Status: Open.

#5 In BoevaLab/ONCOCNV;

· kmavrommatis opened on Mar 23, 2017

Error while running OnCOCNV

Status: Open.

#4 In BoevaLab/ONCOCNV;

· Nitin123-4 opened on Feb 17, 2017