Search results

Implement the logic to draw UMI ditsribution plots

enhancementNew feature or requestNew feature or request

steps/calib_dedupcalib deduplication stepcalib deduplication step

workflow

Status: Open.

#118 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 28, 2024

Optimize concatenation of output annotations in IgBLAST

steps/igblastigblast (cdr3 mapping and annotating) stepigblast (cdr3 mapping and annotating) step

Status: Open.

#117 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 26, 2024

Optimize the IgBLAST step to process target sequence data

enhancementNew feature or requestNew feature or request

workflow

Status: Open.

#116 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 26, 2024

PyUMI fails with an unreadable error

invalidThis doesn't seem rightThis doesn't seem right

steps/pyumiumi preprocessing stepumi preprocessing step

Status: Open.

#114 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 25, 2024

Create a container to generate an archive with olga models

steps/cdr3nt_error_correctorcdr3 error correction stepcdr3 error correction step

workflow

Status: Open.

#100 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 17, 2024

Create a container to generate a vidjil reference

enhancementNew feature or requestNew feature or request

steps/vidjilvidjil (cdr3 mapping) stepvidjil (cdr3 mapping) step

workflow

Status: Open.

#99 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 17, 2024

Reformat pipeline structure

priority: low

workflow

Status: Open.

#85 In BostonGene/pyigmap;

· nsyzrantsev opened on Jun 3, 2024

Research: docker container around pyigmap?

priority: low

workflow

Status: Open.

#79 In BostonGene/pyigmap;

· nsyzrantsev opened on May 22, 2024

Set CPUs count and RAM size as parameters at pyigmap

workflow

Status: Open.

#65 In BostonGene/pyigmap;

· nsyzrantsev opened on May 14, 2024

Update python3.9 -> python3.12

priority: low

steps/calib_dedupcalib deduplication stepcalib deduplication step

steps/cdr3nt_error_correctorcdr3 error correction stepcdr3 error correction step

steps/downloader

steps/fastpfastq merging stepfastq merging step

steps/igblastigblast (cdr3 mapping and annotating) stepigblast (cdr3 mapping and annotating) step

steps/vidjilvidjil (cdr3 mapping) stepvidjil (cdr3 mapping) step

Status: Open.

#63 In BostonGene/pyigmap;

· nsyzrantsev opened on May 14, 2024

Build reference inside docker container

priority: medium

steps/cdr3nt_error_correctorcdr3 error correction stepcdr3 error correction step

steps/igblastigblast (cdr3 mapping and annotating) stepigblast (cdr3 mapping and annotating) step

steps/vidjilvidjil (cdr3 mapping) stepvidjil (cdr3 mapping) step

Status: Open.

#59 In BostonGene/pyigmap;

· nsyzrantsev opened on May 12, 2024

Skip annotation field if empty in filter_non_productive

invalidThis doesn't seem rightThis doesn't seem right

steps/cdr3nt_error_correctorcdr3 error correction stepcdr3 error correction step

Status: Open.

#56 In BostonGene/pyigmap;

· mikessh opened on May 12, 2024