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Filtering cells using a criteria met by all cells breaks functionality

bugSomething isn't workingSomething isn't working

Status: Open.

#57 In BradhamLab/scPipe;

· dakota-hawkins opened on Nov 5, 2018

Compare expression profiles

featureRequired feature for expected behaviorRequired feature for expected behavior

Status: Open.

#55 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 24, 2018

Better modularize SnakeFile

enhancementNew feature or requestNew feature or request

Status: Open.

#53 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 24, 2018

Add TPM Support to gene collapse.

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 23, 2018

Add transcript length annotation to gene data

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 10, 2018

Add TF-IDF normalization step

enhancementNew feature or requestNew feature or request

featureRequired feature for expected behaviorRequired feature for expected behavior

Status: Open.

#39 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 2, 2018

·  

0.1

Look in to negative expression values in tpm normalized data.

bugSomething isn't workingSomething isn't working

Status: Open.

#38 In BradhamLab/scPipe;

· dakota-hawkins opened on Oct 2, 2018

·  

0.1

Specify expected output files exactly from STAR genome generation

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In BradhamLab/scPipe;

· dakota-hawkins opened on Aug 29, 2018

·  

0.1

Add optional cluster 'cluster' parameter that species cluster run

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In BradhamLab/scPipe;

· dakota-hawkins opened on Aug 29, 2018

·  

0.1

Document new configuration set up

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In BradhamLab/scPipe;

· dakota-hawkins opened on Aug 27, 2018

·  

0.1

Document required conda environments

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In BradhamLab/scPipe;

· dakota-hawkins opened on Aug 27, 2018

·  

0.1

Add original data protection in combined data step

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In BradhamLab/scPipe;

· dakota-hawkins opened on Aug 27, 2018

·  

0.1