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  • basic inference functionality
  • basic tests
  • basic docs
  • Readme setup
  • Zenodo integration

@MarcelRosier MarcelRosier self-assigned this Aug 21, 2025
Copilot AI review requested due to automatic review settings August 21, 2025 16:22
@MarcelRosier MarcelRosier linked an issue Aug 21, 2025 that may be closed by this pull request

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@neuronflow neuronflow requested a review from Copilot August 22, 2025 13:06

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looks good on first glance, let's release so we can deploy and test :)

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
@neuronflow neuronflow requested a review from Copilot August 23, 2025 08:09
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Pull Request Overview

This PR sets up the initial structure and functionality for the stroke_segmentor package, implementing basic inference capabilities for ischemic stroke lesion segmentation in MRI.

Key Changes:

  • Complete package renaming from template "PACKAGE_NAME" to "stroke_segmentor"
  • Implementation of core inference pipeline with Zenodo integration for model weights
  • Basic test coverage for all main components

Reviewed Changes

Copilot reviewed 19 out of 23 changed files in this pull request and generated 4 comments.

Show a summary per file
File Description
stroke_segmentor/zenodo.py Implements Zenodo API integration for downloading and managing model weights
stroke_segmentor/model_handler.py Core model loading and inference logic using MONAI framework
stroke_segmentor/inferer.py High-level inference interface with optional result saving
tests/test_zenodo.py Comprehensive tests for Zenodo functionality
tests/test_model_handler.py Basic tests for model handler initialization
tests/test_inferer.py Tests for inference pipeline with mocking
pyproject.toml Updated package configuration and dependencies
README.md Updated documentation with usage examples

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@neuronflow neuronflow requested a review from Copilot August 23, 2025 11:56
@neuronflow neuronflow merged commit 0a20a7e into main Aug 23, 2025
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[FEATURE] Initial setup

3 participants