test(tagger): remove unused modules

[tai271828]

House cleaning. Remove the modules that are not actually used in this test module.

Steps to Verify This Pull Request

SingleCellMultiOmics $ python -m unittest tests/test_tagger.py                                                                                                                                                                                                    
Forcing one contig per process                                                                                                                                                                                                               
Tagging using multi-processing                                                                                                                                                                                                               
Merging final bam files                                                                                                                                                                                                                      
.Started writing to ./data/write_test_chic_rg.bam                                                                                                                                                                                            
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.chic.CHICMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.chic.CHICFragment'>, 'molecule_class_args': {'umi_hamming_distance'
: 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0}, 'yield_invalid': True, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False, 'skip_contigs': set(), 'progress_ca
llback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}                                                                                                                                                             
.Started writing to ./data/write_test_rg.bam                                                                                                                                                                                                 
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.nlaIII.NlaIIIMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.nlaIII.NlaIIIFragment'>, 'molecule_class_args': {'umi_hamming_d
istance': 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0, 'allow_cycle_shift': True}, 'yield_invalid': False, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False,
 'skip_contigs': {'chrMT', 'chr1'}, 'progress_callback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}                                                                                                             
.Started writing to ./data/write_test_rg.bam                                                                                                                                                                                                 
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.nlaIII.NlaIIIMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.nlaIII.NlaIIIFragment'>, 'molecule_class_args': {'umi_hamming_d
istance': 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0, 'allow_cycle_shift': True}, 'yield_invalid': False, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False,
 'skip_contigs': {'chr3', 'chr2'}, 'progress_callback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}                                                                                                              
.Forcing one contig per process                                                                                                                                                                                                              
Tagging using multi-processing                                                                                                                                                                                                               
Merging final bam files
.Forcing one contig per process                                                                                                                        
Tagging using multi-processing
Merging final bam files                                                                    
.Started writing to ./data/write_test_rg.bam                                       
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.nlaIII.NlaIIIMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.nlaIII.NlaIIIFragment'>, 'molecule_class_args': {'umi_hamming_$
istance': 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0}, 'yield_invalid': True, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False, 'skip_contigs': set(), 'pr$
gress_callback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}
.Started writing to ./data/write_test_rg.bam                               
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.nlaIII.NlaIIIMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.nlaIII.NlaIIIFragment'>, 'molecule_class_args': {'umi_hamming_$
istance': 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0, 'allow_cycle_shift': True}, 'yield_invalid': True, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False,
'skip_contigs': set(), 'progress_callback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}
.Started writing to ./data/write_test_rg.bam
Params: {'query_name_flagger': None, 'molecule_class': <class 'singlecellmultiomics.molecule.nlaIII.NlaIIIMolecule'>, 'fragment_class': <class 'singlecellmultiomics.fragment.nlaIII.NlaIIIFragment'>, 'molecule_class_args': {'umi_hamming_$
istance': 1, 'reference': None}, 'fragment_class_args': {'read_group_format': 0, 'allow_cycle_shift': True}, 'yield_invalid': False, 'yield_overflow': True, 'start': None, 'end': None, 'contig': None, 'every_fragment_as_molecule': False$
 'skip_contigs': set(), 'progress_callback_function': None, 'pooling_method': 1, 'perform_allele_clustering': False}
.        
----------------------------------------------------------------------  
Ran 9 tests in 29.617s                                                                                                                                 
                                         
OK