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Merged
joelteply merged 5 commits into from
Feb 19, 2026
Merged

Directory restructure + RAG token budget + persona recovery #271

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8531728
Relocate source from src/debug/jtag/ to src/ + root cleanup
joelteply Feb 18, 2026
8615f53
Token budget enforcement: replace guessed message counts with actual …
joelteply Feb 19, 2026
4d3f797
Fix remaining src/debug/jtag path references across docs, scripts, an…
joelteply Feb 19, 2026
1f23eae
Consolidate overflow conversation history instead of silently droppin…
joelteply Feb 19, 2026
99e44dc
Fix persona stuck on failed messages: always advance bookmark
joelteply Feb 19, 2026
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6 changes: 3 additions & 3 deletions .continuum/genome/SETUP-COMPLETE.md
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Expand Up @@ -30,7 +30,7 @@
### 2. TypeScript Integration

**Modified Files:**
- `src/debug/jtag/system/genome/fine-tuning/server/adapters/UnslothLoRAAdapter.ts`
- `src/system/genome/fine-tuning/server/adapters/UnslothLoRAAdapter.ts`
- `supportsFineTuning()`: Checks if environment bootstrapped
- `executeUnslothTraining()`: Uses wrapper script (auto-activates conda)
- Clear error messages if environment missing
Expand Down Expand Up @@ -299,7 +299,7 @@ If Unsloth import fails, training falls back to standard PyTorch (slower but wor

.gitignore # MODIFIED - Added genome paths

src/debug/jtag/system/genome/fine-tuning/server/adapters/
src/system/genome/fine-tuning/server/adapters/
└── UnslothLoRAAdapter.ts # MODIFIED - Uses wrapper script
```

Expand All @@ -319,7 +319,7 @@ src/debug/jtag/system/genome/fine-tuning/server/adapters/
## Questions?

**Setup issues:** See `.continuum/genome/python/README.md`
**Architecture questions:** See `src/debug/jtag/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
**Architecture questions:** See `src/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
**Training errors:** Run test script first to verify environment

**Philosophy:** "Test the shit out of it" - Every piece is validated before integration.
6 changes: 3 additions & 3 deletions .continuum/genome/python/README.md
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Expand Up @@ -101,7 +101,7 @@ python3 -c "import unsloth; print(unsloth.__version__)"

```bash
.continuum/genome/python/train-wrapper.sh \
src/debug/jtag/system/genome/fine-tuning/server/adapters/scripts/peft-train.py \
src/system/genome/fine-tuning/server/adapters/scripts/peft-train.py \
--config config.json \
--output output/
```
Expand Down Expand Up @@ -245,5 +245,5 @@ If training fails with unclear errors:
4. Check logs in temporary test directory

For architecture questions, see:
- `src/debug/jtag/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
- `src/debug/jtag/system/user/server/modules/LORA-GENOME-PAGING.md`
- `src/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
- `src/system/user/server/modules/LORA-GENOME-PAGING.md`
2 changes: 1 addition & 1 deletion .continuum/genome/python/test-training.sh
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Expand Up @@ -75,7 +75,7 @@ echo ""
mkdir -p "$TEST_DIR/output"

if "$SCRIPT_DIR/train-wrapper.sh" \
"$(dirname "$SCRIPT_DIR")/../../src/debug/jtag/system/genome/fine-tuning/server/adapters/scripts/unsloth-train.py" \
"$(dirname "$SCRIPT_DIR")/../../src/system/genome/fine-tuning/server/adapters/scripts/unsloth-train.py" \
--config "$TEST_DIR/config.json" \
--output "$TEST_DIR/output"; then

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17 changes: 0 additions & 17 deletions .eslintignore
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27 changes: 0 additions & 27 deletions .eslintrc.js
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4 changes: 2 additions & 2 deletions .github/workflows/ci.yml
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Expand Up @@ -11,7 +11,7 @@ jobs:
runs-on: ubuntu-latest
defaults:
run:
working-directory: src/debug/jtag
working-directory: src

steps:
- uses: actions/checkout@v4
Expand All @@ -21,7 +21,7 @@ jobs:
with:
node-version: '20'
cache: 'npm'
cache-dependency-path: src/debug/jtag/package-lock.json
cache-dependency-path: src/package-lock.json

- name: Install dependencies
run: npm ci
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12 changes: 6 additions & 6 deletions .github/workflows/dependencies.yml
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Expand Up @@ -4,13 +4,13 @@ on:
push:
branches: [ main ]
paths:
- 'src/debug/jtag/package.json'
- 'src/debug/jtag/package-lock.json'
- 'src/package.json'
- 'src/package-lock.json'
pull_request:
branches: [ main ]
paths:
- 'src/debug/jtag/package.json'
- 'src/debug/jtag/package-lock.json'
- 'src/package.json'
- 'src/package-lock.json'
schedule:
- cron: '0 0 * * 0' # Run weekly on Sunday at midnight

Expand All @@ -19,7 +19,7 @@ jobs:
runs-on: ubuntu-latest
defaults:
run:
working-directory: src/debug/jtag
working-directory: src

steps:
- uses: actions/checkout@v4
Expand All @@ -29,7 +29,7 @@ jobs:
with:
node-version: '20'
cache: 'npm'
cache-dependency-path: src/debug/jtag/package-lock.json
cache-dependency-path: src/package-lock.json

- name: Install dependencies
run: npm ci
Expand Down
6 changes: 3 additions & 3 deletions .github/workflows/validate-continuum.yml
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Expand Up @@ -3,14 +3,14 @@ name: Validate Continuum Config
on:
pull_request:
paths:
- 'src/debug/jtag/**'
- 'src/**'

jobs:
validate:
runs-on: ubuntu-latest
defaults:
run:
working-directory: src/debug/jtag
working-directory: src

steps:
- uses: actions/checkout@v4
Expand All @@ -20,7 +20,7 @@ jobs:
with:
node-version: '20'
cache: 'npm'
cache-dependency-path: src/debug/jtag/package-lock.json
cache-dependency-path: src/package-lock.json

- name: Install dependencies
run: npm ci
Expand Down
6 changes: 3 additions & 3 deletions .gitignore
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Expand Up @@ -13,7 +13,7 @@ build/
continuum-jtag-*.tgz

# Generated manifest files (use generated.ts instead)
src/debug/jtag/manifests/
src/manifests/

# Generated test files
test-config.md
Expand Down Expand Up @@ -162,7 +162,7 @@ src/ui/**/*.d.ts
src/commands/**/*.js
src/commands/**/*.js.map
src/commands/**/*.d.ts
/src/debug/jtag/.archive
/src/.archive
.tgz

# Runtime directories (session data, logs, temp files)
Expand All @@ -178,4 +178,4 @@ src/commands/**/*.d.ts
!CLAUDE.md
!test*output.txt
_archive/
src/debug/jtag/.continuum/sessions/validation/
src/.continuum/sessions/validation/
16 changes: 8 additions & 8 deletions CLAUDE.md
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Expand Up @@ -337,7 +337,7 @@ let results = algo.execute(&input);
4. **Repeat**

```bash
cd src/debug/jtag
cd src
npm start # DEPLOYS code changes, takes 130s or so

./jtag ping #check for server and browser connection
Expand Down Expand Up @@ -970,7 +970,7 @@ npm start

### Documentation

**Full Architecture**: `src/debug/jtag/system/user/server/modules/`
**Full Architecture**: `src/system/user/server/modules/`
- `AUTONOMOUS-LOOP-ROADMAP.md` - RTOS-inspired servicing
- `SELF-MANAGED-QUEUE-DESIGN.md` - AI autonomy through tasks
- `LORA-GENOME-PAGING.md` - Virtual memory for skills
Expand Down Expand Up @@ -1144,7 +1144,7 @@ The AIs will:
**Fix**: Always take screenshot after deployment

### 3. WRONG WORKING DIRECTORY
**Always work from**: `src/debug/jtag`
**Always work from**: `src`
**Commands**: `./jtag` NOT `./continuum`

### 4. IGNORE EXISTING TYPES
Expand Down Expand Up @@ -1433,20 +1433,20 @@ grep -r "UserEntity\|ChatMessageEntity" daemons/data-daemon/ | grep -v EntityReg
# Should return zero results (except EntityRegistry.ts)
```

### **[UNIVERSAL-PRIMITIVES.md](src/debug/jtag/docs/UNIVERSAL-PRIMITIVES.md)**
### **[UNIVERSAL-PRIMITIVES.md](src/docs/UNIVERSAL-PRIMITIVES.md)**
Commands.execute() and Events.subscribe()/emit() - the two primitives everything is built on.

### **[GENERATOR-OOP-PHILOSOPHY.md](src/debug/jtag/docs/GENERATOR-OOP-PHILOSOPHY.md)** - CORE PHILOSOPHY
### **[GENERATOR-OOP-PHILOSOPHY.md](src/docs/GENERATOR-OOP-PHILOSOPHY.md)** - CORE PHILOSOPHY
Generators and OOP are intertwined parallel forces:
- Generators ensure structural correctness at creation time
- OOP/type system ensures behavioral correctness at runtime
- AIs should strive to create generators for any repeatable pattern
- This enables tree-based delegation of ability with compounding capability

### **PersonaUser Convergence Docs**
- `src/debug/jtag/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
- `src/debug/jtag/system/user/server/modules/AUTONOMOUS-LOOP-ROADMAP.md`
- `src/debug/jtag/system/user/server/modules/LORA-GENOME-PAGING.md`
- `src/system/user/server/modules/PERSONA-CONVERGENCE-ROADMAP.md`
- `src/system/user/server/modules/AUTONOMOUS-LOOP-ROADMAP.md`
- `src/system/user/server/modules/LORA-GENOME-PAGING.md`

**Quick tip**: If you're about to write code that duplicates patterns or violates architecture rules, STOP and read ARCHITECTURE-RULES.md first. Then apply the aggressive refactoring principle from this guide.

Expand Down
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