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manually modifying preprocess outputs before confound

Status: Open.

#471 In CoBrALab/RABIES;

· mapepe18 opened on Jan 21, 2026

Convert container, package, and installation instructions to use UV

Status: Open.

#470 In CoBrALab/RABIES;

· gdevenyi opened on Jan 21, 2026

Update all docker container references to github cobralab container

Status: Open.

#468 In CoBrALab/RABIES;

· gdevenyi opened on Jan 14, 2026

SIGMA Rat Brain Template and Atlas Substitution

Status: Open.

#467 In CoBrALab/RABIES;

· hookeba opened on Jan 14, 2026

Change to antsRegistration_affine_SyN.sh

Status: Open.

#457 In CoBrALab/RABIES;

· Gab-D-G opened on Oct 29, 2025

Bugs with version 0.5.4

Status: Open.

#454 In CoBrALab/RABIES;

· Gab-D-G opened on Oct 28, 2025

Attempting to process mouse brain functional ultrasound data with RABIES fails if more than one subject

Status: Open.

#446 In CoBrALab/RABIES;

· benhibou opened on Oct 13, 2025

Template orientation issue

Status: Open.

#441 In CoBrALab/RABIES;

· kjamison opened on Sep 16, 2025

Bold inhomogeneity correction

Status: Open.

#437 In CoBrALab/RABIES;

· JonasVejmelka opened on Aug 14, 2025

Image misalignment and failure in spatial inhomogeneity correction

Status: Open.

#431 In CoBrALab/RABIES;

· ParsaNilchian opened on Jul 8, 2025

Group ICA fails with "No convergence — giving up" message

Status: Open.

#422 In CoBrALab/RABIES;

· mhanafyuwo opened on May 15, 2025

Properly handle paths as Pathlib everywhere in code (was: PATH errors on bare-metal windows)

Status: Open.

#418 In CoBrALab/RABIES;

· schmidt12335 opened on Apr 29, 2025