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Modify tagging #5

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@JYlag JYlag commented Aug 19, 2024

This PR will modify a few things regarding versioning and tagging in this repo.

  • We are now versioning internally our own AF2 repo so any changes we make to our fork, It will be less confusing when we merge upstream changes from the original AlphaFold and keep versions in sync.
  • Display relevant versioning in the tag message
  • Remove redundant docker image build step and remove conditional for push vs tag

Augustin-Zidek and others added 19 commits March 21, 2024 06:03
@Augustin-Zidek @copybara-github
Fix how we extract mmCIF resolution (fix ordering issue).
6d95d19 
Thanks to @ljarosch for reporting and suggesting a fix in google-deepmind#915.

PiperOrigin-RevId: 617817805
Change-Id: I46738b248a054d06fe902626cff161fe521e99f1
@Htomlinson14 @copybara-github
Update jax, haiku and chex versions.
5208f1b 
PiperOrigin-RevId: 623469847
Change-Id: I64a812e00e099f6503b9aa1e0cfde1133ea8a774
@Htomlinson14 @copybara-github
Remove deprecated PRNGKeyArray.
7e7de59 
PiperOrigin-RevId: 623494831
Change-Id: Ie15c1d517fd7b34662d69d05205151d9c7021da4
@Htomlinson14 @copybara-github
Update requirements:
dbe2a43 
- Ubuntu to 20.04
- Cuda to 12.2.2
- Tensorflow to 2.16.1
- Jax to 0.4.26
- Openmm to 8.0.0

PiperOrigin-RevId: 624094170
Change-Id: I49391c3f721e93ac8ccd5a4483cdb6f2ec61cd3b
@Htomlinson14 @copybara-github
Update openmm in AlphaFold colab.
4d4a1ae 
PiperOrigin-RevId: 625019041
Change-Id: If6e5b23edeb1f06bd91b4daf1c449d12ed407895
@Augustin-Zidek @copybara-github
Add documentation for AlphaFold Server JSON file format.
f251de6 
PiperOrigin-RevId: 631787106
Change-Id: Ib58c166a2945d459c1555dd1920963887b8d7c16
@BrandonFrenz
added option to exclude pdb templates by pdbid
f91d9fb
@BrandonFrenz
bumped the version
7115e87
@BrandonFrenz
Merge pull request #1 from LevitateBio/exclude-pdbs
efbf8ce 
Added the option to exclude templates based on pdb id.
@JYlag
merge upstream alphafold 2.3.2 version
755c443
@JYlag
Testing out package installations
c2bcee2
@JYlag
Try out a differeny package name
88762bd
@JYlag
Specific version for cuda-compiler
6eff324
@JYlag
Missed the channel
ed470ba
@JYlag
Adding cuda-runtime package
c0c3e33
@JYlag
Install properly versioned CUDA modules
4fda4f0
@JYlag
Merge pull request #2 from LevitateBio/merge-upstream-changes
6266987 
Merge upstream changes for CUDA 12
@JYlag
Add separate Levitate versioning and updating tagging logic
cfb9ded
@JYlag
Fix get version in Drone file
2c1e115
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4 participants

@JYlag @Augustin-Zidek @Htomlinson14 @BrandonFrenz