Skip to content
View DanPalBCM's full-sized avatar

Block or report DanPalBCM

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
DanPalBCM/README.md

Hi there πŸ‘‹

I'm Daniel Palacios, a 4th-year Ph.D. Candidate in Quantitative & Computational Biosciences at Baylor College of Medicine, and an NSF Graduate Research Fellow (2024) and NLM Fellow (2023). My research focuses on building LLM-based AI agents, AutoML systems, and predictive models for clinical informatics and healthcare applications.


🧠 Current Research Areas

πŸ”Ή Postpartum Mental Health

  • Developed hybrid pipelines combining AutoML with LLM-based agents to predict postpartum depression using clinical notes from first hospital visits.

πŸ”Ή Pediatric Epilepsy & Sleep Disorders

  • Used AI agents and statistical modeling to analyze links between sleep disorders and epilepsy in pediatric patients.

πŸ”Ή Rare Disease Cohort Identification

  • Built LLM-powered agent pipelines with retrieval-augmented generation (RAG) to extract HPO terms and identify rare disease cohorts from unstructured clinical data.

πŸ”Ή Immunodeficiency Phenotyping

  • Engineered LLM-based tools for phenotype extraction from clinical notes, validated against clinician annotations.

πŸ”Ή Pediatric Diabetes (T1D/T2D)

  • Applied AutoML and agent-based inference systems to identify DKA risk factors in children with Type 1 Diabetes.

πŸ”Ή Semantic Patient Matching

  • Created a semantic similarity AI agent using RAG to match patients in large clinical databases, enhancing decision support.

πŸ› οΈ Technical Skills

  • Languages/Frameworks: Python, PyTorch, scikit-learn, HuggingFace, Streamlit
  • LLM Techniques: QLoRA fine-tuning, RAG, PEFT
  • Cloud: AWS SageMaker, Amazon Bedrock
  • Tools: Git, Docker, Conda, Jupyter, VS Code

πŸ§‘β€πŸ« Teaching Experience

Teaching Assistant – QCMB 1 & 2 (2023–2025)

  • Supported instruction in Quantitative & Computational Methods for Biosciences
  • Led lectures, graded assignments/exams, and created supplemental materials on Probability Theory, Statistics, and ML for Biosciences

πŸ’¬ Let's Connect


Thanks for visiting! πŸš€ I'm always open to collaboration and mentorship opportunities in AI + healthcare.

Pinned Loading

  1. AMMPER AMMPER Public

    Forked from nasa/AMMPER

    Python 1

  2. MedSDoH MedSDoH Public

    Forked from OHNLP/MedSDoH

    SDoH annotation project

    Python