Skip to content
@DeepMicroscopy

DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

Popular repositories Loading

  1. SlideRunner SlideRunner Public

    SlideRunner is a tool for massive cell annotations in whole slide images

    Python 80 11

  2. Exact Exact Public

    An open source online platform for collaborative image labeling of almost everything

    JavaScript 62 20

  3. MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

    Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 30 9

  4. MITOS_WSI_CMC MITOS_WSI_CMC Public

    Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

    Jupyter Notebook 21 10

  5. MIDOGpp MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    Python 20 17

  6. MIDOG MIDOG Public

    MItosis DOmain Generalization Challenge 2021/2022

    Python 14 5

Repositories

Showing 10 of 52 repositories
  • Exact Public

    An open source online platform for collaborative image labeling of almost everything

    DeepMicroscopy/Exact’s past year of commit activity
    JavaScript 62 MIT 20 17 0 Updated Feb 5, 2026
  • SWAN Public
    DeepMicroscopy/SWAN’s past year of commit activity
    Python 2 0 24 0 Updated Jan 18, 2026
  • MIDOG25_T1_evaluation_docker Public

    Repository for the evaluation script of submissions on MIDOG'25 on grand-challenge.

    DeepMicroscopy/MIDOG25_T1_evaluation_docker’s past year of commit activity
    Python 0 0 0 0 Updated Dec 30, 2025
  • AMi-Br_Benchmark Public

    Code for the paper 'Benchmarking Deep Learning and Vision Foundation Models for Atypical vs. Normal Mitosis Classification with Cross-Dataset Evaluation'

    DeepMicroscopy/AMi-Br_Benchmark’s past year of commit activity
    Jupyter Notebook 2 MIT 1 1 0 Updated Dec 12, 2025
  • FoundationModelComparison Public

    Code for our arxiv preprint: https://arxiv.org/abs/2508.04441

    DeepMicroscopy/FoundationModelComparison’s past year of commit activity
    Python 0 1 0 0 Updated Dec 12, 2025
  • DECOMP Public
    DeepMicroscopy/DECOMP’s past year of commit activity
    Python 0 0 0 0 Updated Dec 9, 2025
  • MIDOGpp Public

    A large, multi-domain mitotic Figure Dataset

    DeepMicroscopy/MIDOGpp’s past year of commit activity
    Python 20 MIT 17 3 0 Updated Nov 8, 2025
  • AgenticPathologyReports Public

    Repository for the paper "Errare algorithmicum est - Exploring General-Purpose Autonomous Multimodal Agents for Pathology Report Generation"

    DeepMicroscopy/AgenticPathologyReports’s past year of commit activity
    0 1 0 0 Updated Oct 28, 2025
  • MIDOG25_T1_reference_docker Public

    Reference algorithm for the MIDOG 2025 challenge, track 1 (Mitosis Detection)

    DeepMicroscopy/MIDOG25_T1_reference_docker’s past year of commit activity
    Python 0 1 0 0 Updated Aug 30, 2025
  • Annotation-free-VLM-specialization Public
    DeepMicroscopy/Annotation-free-VLM-specialization’s past year of commit activity
    Python 2 0 1 0 Updated Aug 11, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…