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@EarlhamInst

Earlham Institute

BBSRC-supported life science research institute in Norwich, UK

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  1. KAT KAT Public

    The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

    C++ 220 51

  2. NanoOK NanoOK Public

    Forked from richardmleggett/NanoOK

    Analysis tool for Nanopore sequencing data

    Java 34 8

  3. RAMPART RAMPART Public

    A configurable de novo assembly pipeline

    Java 28 6

  4. 361Division 361Division Public

    361 Division - Scientific Training, Education and Learning

    R 28 31

  5. kontaminant kontaminant Public

    Tool to look for contaminants, with a kmer database.

    C 15 5

  6. earlham-galaxytools earlham-galaxytools Public

    Galaxy tools and workflows developed at the Earlham Institute

    Python 14 15

Repositories

Showing 10 of 162 repositories
  • rfparser Public

    Parse ResearchFish publications to update CKAN

    EarlhamInst/rfparser’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 24, 2025
  • COPO-production Public

    COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.

    EarlhamInst/COPO-production’s past year of commit activity
    JavaScript 5 MIT 2 0 5 Updated Dec 23, 2025
  • COPO-schemas Public

    This repository provides a collection of schemas, or data objects, for representing different types of metadata.

    EarlhamInst/COPO-schemas’s past year of commit activity
    1 MIT 0 0 0 Updated Dec 19, 2025
  • knowledge_base Public

    EI specific documentation (induction materials, tool/method specific advice); contributions made by EI users.

    EarlhamInst/knowledge_base’s past year of commit activity
    3 0 0 0 Updated Dec 18, 2025
  • eista Public

    A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

    EarlhamInst/eista’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 17, 2025
  • eisca Public

    A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

    EarlhamInst/eisca’s past year of commit activity
    Nextflow 2 MIT 1 2 0 Updated Dec 9, 2025
  • grassroots-service-field-trial Public

    A Grassroots service for storing the data for field trials

    EarlhamInst/grassroots-service-field-trial’s past year of commit activity
    C 2 Apache-2.0 0 0 0 Updated Dec 8, 2025
  • earlham-galaxytools Public

    Galaxy tools and workflows developed at the Earlham Institute

    EarlhamInst/earlham-galaxytools’s past year of commit activity
    Python 14 MIT 15 7 3 Updated Dec 8, 2025
  • COPO-documentation Public

    COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.

    EarlhamInst/COPO-documentation’s past year of commit activity
    Python 2 Apache-2.0 0 0 2 Updated Dec 6, 2025
  • SingleCellSchemas Public

    For resources related to the EI Cellgen ISP, including metadata mappings and schemas for Single Cell Genomics and Spatial Transcriptomics experiments.

    EarlhamInst/SingleCellSchemas’s past year of commit activity
    Python 1 0 0 0 Updated Dec 3, 2025
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