README

Chick Embryo Elongation Data Analysis

Content

The chick_elong_paper repository holds the data analyses code applied to the chick embryo measurements in early development, including:

• the raw data (input);
• analyses scripts (using literate programming with Rmarkdown notebooks)
• results and data visualization.

Citation

Scientific article

Title | A Morphometric Characterization of Early Chick Embryo Elongation
Authors | A.C. Maia-Fernandes; Tomas Pais-de-Azevedo*; Nísia Borralho-Martins*; Sara Ramalhete; Gabriel Martins; Isabel Palmeirim; Isabel Duarte; Paulo Martel; Ana Marreiros; Raquel P. Andrade
Submitted to Developmental Biology

Data repository

TBA (after manuscript publication).

Reproducible data analysis

1. To re-run the analysis, run the code provided in the RMarkdown notebooks for each of the analysis performed: chick_elong_[analysis_name].Rmd files.

2. To just inspect the data analysis performed, please download and open in your favorite browser the .html files from each analysis: chick_elong_[analysis_name].html files.