Fix action

.github/workflows/pythonapp.yml

@@ -15,7 +15,7 @@ jobs:
 
     steps:
     - name: Checkout code
-      uses: actions/checkout@v2
+      uses: actions/checkout@v4
       with:
         fetch-depth: 0
         # lfs: true
@@ -33,15 +33,15 @@ jobs:
     - name: Git LFS Pull
       run: git lfs pull
 
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v1
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v5
       with:
-        python-version: 3.8
+        python-version: 3.9
     - name: Install dependencies
       run: |
         pip install ".[dev]"
         sudo apt-get update
-        sudo apt-get install libssl-dev libcurl4-openssl-dev
+        sudo apt-get install libssl-dev libcurl4-openssl-dev libpng-dev
     - name: Test with nose
       run: |
         nosetests -s -v
@@ -53,7 +53,13 @@ jobs:
     - uses: r-lib/actions/setup-r@v2
     - uses: r-lib/actions/setup-pandoc@v2
     - name: Install R packages
-      run: Rscript -e 'install.packages(c("rmarkdown", "plotly", "dplyr", "htmlwidgets", "htmltools", "jsonlite", "readr", "DT", "remotes", "pmlbr"))'
+      env:
+        GITHUB_PAT: ${{ secrets.GH_PAT }}
+      shell: Rscript {0}
+      run: |
+        install.packages(c("rmarkdown", "plotly", "dplyr", "htmlwidgets", "htmltools", "jsonlite", "readr", "DT", "remotes"))
+        remotes::install_github("EpistasisLab/pmlbr")
+
 
     - name: Set up reticulate
       run: |

pmlb/profiling.py

@@ -3,7 +3,7 @@
 import subprocess
 
 import pandas as pd
-from pandas_profiling import ProfileReport
+from ydata_profiling import ProfileReport  # Updated import
 
 from .pmlb import (
     fetch_data, get_updated_datasets, last_commit_message

setup.py

@@ -41,7 +41,7 @@ def calculate_version():
                     ],
     extras_require={
         'dev': ['nose', 'numpy', 'scipy', 'tabulate', 'parameterized',
-        'matplotlib', 'seaborn', 'pandas-profiling'],
+        'matplotlib', 'seaborn', 'ydata-profiling'],
     },
     classifiers=[
         'Intended Audience :: Developers',