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chore(lapis-docs): bump react and @types/react in /lapis-docs #1388

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@dependabot dependabot bot commented on behalf of github Oct 6, 2025 •
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Bumps react and @types/react. These dependencies needed to be updated together.
Updates react from 18.3.1 to 19.2.0

Release notes

Sourced from react's releases.

19.2.0 (Oct 1, 2025)

Below is a list of all new features, APIs, and bug fixes.

Read the React 19.2 release post for more information.

New React Features

  • <Activity>: A new API to hide and restore the UI and internal state of its children.
  • useEffectEvent is a React Hook that lets you extract non-reactive logic into an Effect Event.
  • cacheSignal (for RSCs) lets your know when the cache() lifetime is over.
  • React Performance tracks appear on the Performance panel’s timeline in your browser developer tools

New React DOM Features

  • Added resume APIs for partial pre-rendering with Web Streams:
  • Added resume APIs for partial pre-rendering with Node Streams:
  • Updated prerender APIs to return a postponed state that can be passed to the resume APIs.

Notable changes

  • React DOM now batches suspense boundary reveals, matching the behavior of client side rendering. This change is especially noticeable when animating the reveal of Suspense boundaries e.g. with the upcoming <ViewTransition> Component. React will batch as much reveals as possible before the first paint while trying to hit popular first-contentful paint metrics.
  • Add Node Web Streams (prerender, renderToReadableStream) to server-side-rendering APIs for Node.js
  • Use underscore instead of : IDs generated by useId

All Changes

React

React DOM

... (truncated)

Changelog

Sourced from react's changelog.

19.2.0 (October 1st, 2025)

Below is a list of all new features, APIs, and bug fixes.

Read the React 19.2 release post for more information.

New React Features

  • <Activity>: A new API to hide and restore the UI and internal state of its children.
  • useEffectEvent is a React Hook that lets you extract non-reactive logic into an Effect Event.
  • cacheSignal (for RSCs) lets your know when the cache() lifetime is over.
  • React Performance tracks appear on the Performance panel’s timeline in your browser developer tools

New React DOM Features

  • Added resume APIs for partial pre-rendering with Web Streams:
  • Added resume APIs for partial pre-rendering with Node Streams:
  • Updated prerender APIs to return a postponed state that can be passed to the resume APIs.

Notable changes

  • React DOM now batches suspense boundary reveals, matching the behavior of client side rendering. This change is especially noticeable when animating the reveal of Suspense boundaries e.g. with the upcoming <ViewTransition> Component. React will batch as much reveals as possible before the first paint while trying to hit popular first-contentful paint metrics.
  • Add Node Web Streams (prerender, renderToReadableStream) to server-side-rendering APIs for Node.js
  • Use underscore instead of : IDs generated by useId

All Changes

React

React DOM

... (truncated)

Commits

Updates @types/react from 18.3.12 to 19.2.0

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code labels Oct 6, 2025
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This is a preview of the changelog of the next release. If this branch is not up-to-date with the current main branch, the changelog may not be accurate. Rebase your branch on the main branch to get the most accurate changelog.

Note that this might contain changes that are on main, but not yet released.

Changelog:

0.7.0 (2025-10-15)

⚠ BREAKING CHANGES

  • lapis: make generateLineageIndex in the database config a string field
  • lapis: lapisAllowsRegexSearch on string metadata fields in the database config is not necessary anymore, regex search is always enabled for all string fields.
  • lapis: No longer support .* wildcard in advanced queries. Use ? syntax instead.
  • lapis: use dot symbol as string search regex separator
  • lapis2: throw exception on invalid variant query Maybe operator is case sensitive (in contrast to SQL and my naive user expectation) #797
  • lapis2: read data from SILO as NDJSON

Features

  • also get database config from info controller as YAML (cd6536d)
  • change content type to text/plain when asking for csv/tsv without headers #930 (8313996)
  • docs: document that there is a cache now #137 (88906a4)
  • forward Retry-After header when SILO is not available yet #667 (62bcc7c)
  • implement a request cache for mutation and insertion queries #137 (17ff89c)
  • include link to GitHub issues in LapisInfo #692 (ea42ac2)
  • lapis-docs: document string search feature (ae098a9)
  • lapis-docs: mark sections of the docs that are generated from the config (b2009eb), closes #928
  • lapis-e2e: adjust test data to SILO 0.8 (4d785a7)
  • lapis2-docs: document url encoded forms (8c3ba60), closes #765
  • lapis2: allow filtering for null (f680305)
  • lapis2: clear cache when SILO is restarting (6100bff)
  • lapis2: delete insertions metadata types #804 (dd0ecd1)
  • lapis2: implement boolean columns (7718b4f), closes #740
  • lapis2: make "maybe" mutation queries case-insensitive #797 (0af9c7f)
  • lapis2: read data from SILO as NDJSON (767b19d), closes #741
  • lapis2: stream data from SILO (8fcf360), closes #744
  • lapis2: support url encoded form POST requests (f2f62b1), closes #754
  • lapis2: use entrypoint.sh to allow passing JVM_OPTS through env variable (#823) (9b35b8a), closes #821
  • lapis: abort on startup when silo url has invalid syntax (373d662), closes #939
  • lapis: adapt to new generalized lineage system (508bc8e), closes #961
  • lapis: adapt to SILO changes that renamed the unaligned sequences to have the "unaligned_" prefix (#1225) (d669335)
  • lapis: add fields property to mutation endpoints (#1149) (4d8df3a), closes #1092
  • lapis: add siloVersion to response info (#1066) (c1edcf3)
  • lapis: add advanced queries feature (#1144) (b8e8ca8)
  • lapis: add aminoAcidMutationsOverTime (#1270) (c9adf26), closes #1214
  • lapis: add endpoint /sample/alignedAminoAcidSequences to download all genes at once (#1242) (36dfd5f)
  • lapis: add endpoint /sample/unalignedNucleotideSequences for multi-segmented organism to download several sequences at once (#1246) (f9275c2)
  • lapis: add endpoint to download all aligned segments (or a subset) at once (for multi segmented organisms) (#1235) (6207d32)
  • lapis: add example value to /phyloSubtree endpoints docs (#1337) (21e659e)
  • lapis: add healthcheck to Docker containers (0944990), closes #813
  • lapis: add instance name to landing page json (6c5f81b)
  • lapis: add LAPIS version to info response (#1019) (7d8d713)
  • lapis: add mostRecentCommonAncestor endpoint (#1277) (e062ebc)
  • lapis: add nucleotideMutationsOverTime endpoint (#1229) (cade8d9), closes #1205
  • lapis: add parameter fastaHeaderTemplate to customize the fasta header in sequences endpoints (#1258) (ac7fc29), closes #857
  • lapis: add phylo tree queries to variant filters (#1311) (26e3096)
  • lapis: add PhyloDescendantOf filter option (#1284) (d5681e0)
  • lapis: add phyloSubtree endpoint (#1293) (af5f2a3)
  • lapis: allow customizable filename for file downloads (817d3f4), closes #869
  • lapis: auto remove entries from cache when heap limit is reached (f804004)
  • lapis: drop sorting by segment/gene from docs of sequence endpoints (#1268) (bc67a7c), closes #1248
  • lapis: ensure order preservation for muts and dateRanges in mutationsOverTime (#1317) (8d2c731)
  • lapis: expose the lineage definition files used by SILO (#1073) (2ac977c), closes #1034
  • lapis: hint to which regex syntax is used in Swagger docs (ca4fcdc), closes #903
  • lapis: ignore false-positive compiler warning and add comment (#1174) (6c61a48)
  • lapis: implement landing page when calling / #856 (b886b7d)
  • lapis: make generateLineageIndex in the database config a string field (#1377) (3f02855)
  • lapis: make it possible to fetch sequences in JSON and NDJSON format (ba18956), closes #971
  • lapis: make thread count for SILO client configurable (#1352) (d541fb8)
  • lapis: mutationsOverTime endpoint: return total sequence count per dateRange (#1316) (b29c921)
  • lapis: omit sequences with null values in unaligned fasta downloads (f1931a6), closes #912
  • lapis: only allow regex search for fields that have lapisAllowsRegexSearch: true configured (d146717), closes #898
  • lapis: order CSV/TSV columns of aggregated/details data as specified in the request fields or as in the database config (6cf8704), closes #910
  • lapis: pass through coverage from SILO in mutation endpoints (#1094) (ed90514), closes #1091
  • lapis: regex filtering for string columns #898 (b3e7775)
  • lapis: rename phyloTreeNodeIdentifier as isPhyloTreeField (#1291) (ea4b5ba)
  • lapis: return empty lineage definitions when SILO returns an empty file (#1126) (64651ad)
  • lapis: stream JSON responses (#1053) (bfb5f99), closes #1047
  • lapis: support TSV with escaped special characters (#1295) (d2599f2)
  • lapis: throw error when filtering by "equals" and "regex" for the same string field (540d63a), closes #899
  • lapis: update CHANGELOG.md with details of backported LAPIS v0.5.19 (#1405) (00bdcfb)
  • lapis: use dot symbol as regex separator #908 (3728c7e)
  • lapis: validate that lapisAllowsRegexSearch-fields are of type string (97b3ce9)
  • lapis: validate that metadata fields do not contain the reserved character . (97b3ce9), closes #976
  • log to files again (additionally to stdout) #692 (1acedad)
  • log whether request was cached #717 (3de90f1)
  • make headers accessible to browser despite CORS (4877c04)
  • pass request id to SILO (901e08a)
  • return structured mutation and insertion responses #718 (af38e93)
  • set Content-Type header to application/gzip|zstd when the compression property in the request was set #665 (5592857)
  • support order by random #658 (598b05f)
  • try whether also caching aggregated queries makes cov spectrum faster (bbfaf22)

Bug Fixes

  • consider context path in Swagger UI link (4b12b53)
  • details does no longer return insertions (3686658)
  • file ending when downloading compressed file #685 (6a51de0)
  • import of property (848f4b6)
  • lapis-docs: allow all hosts (#1129) (d0ea4e2), closes #1124
  • lapis-docs: config generator: dateToSortBy, partitionBy and features is optional (4e905e8)
  • lapis-docs: correct invalid gene in example (#1165) (42b79a2)
  • lapis-docs: fix condition when to show the "variant queries are not available" banner (#1186) (6fe60fe)
  • lapis-docs: fix link on landing page (d4137b3)
  • lapis-docs: mention how arrays must be supplied in form urlencoded requests (#1128) (4f24a76), closes #1089
  • lapis-docs: Sequence file naming scheme uses indexes now not names (1e7cd60)
  • lapis-e2e: remove tests that rely on order without specifying lapis to sort output (#1163) (9d30e29)
  • lapis2-docs: relative links must not end with a / (992210d)
  • lapis2-docs: use relative links so that they work when deployed behind a proxy #725 (0cfa8ec)
  • lapis2: also log which line of the SILO response failed to parse (d1badea)
  • lapis2: bring back request id header in OpenAPI docs (eb75391), closes #627
  • lapis2: log request id again (26f83c9)
  • lapis2: only accept a single variant query in a request #798 (54df8e5)
  • lapis2: prefer zstd over gzip #738 (1fb67ac)
  • lapis2: throw exception on invalid variant query #797 (980806a)
  • lapis: add missing dataFormat to amino acid mutation GET endpoint in Swagger UI (#1160) (5c4dbe2), closes #1159
  • lapis: advanced queries: make .regex case-insensitive (#1198) (fd85fa5)
  • lapis: advanced queries: tell which metadata fields exist when finding an unknown one (#1209) (1011154)
  • lapis: allow advanced queries to be used with simple variant and metadata queries (#1212) (8a1409e)
  • lapis: also don't log the stack trace when SILO says that it's not available yet (#1376) (b4ee14d)
  • lapis: also return CSV header when there are no data (#1138) (aba1320), closes #1090
  • lapis: also return sequences that are null when requesting JSON or NDJSON (#1256) (a888965), closes #1255
  • lapis: close connection to SILO if client cancels request to LAPIS (#1393) (17012a8)
  • lapis: don't show the single segmented sequence download when there are no nucleotide sequences (#1054) (f27f94b)
  • lapis: don't spam the log with stack traces when SILO can't be reached (#1373) (0e35d0f)
  • lapis: fix 500 server error in *mutationsOverTime endpoints (#1357) (d056d6c)
  • lapis: fix computation of downloaded file ending with multiple accept headers (3b679a8), closes #890
  • lapis: fix description of mutation objects in OpenApi spec (#1051) (c6f625e)
  • lapis: fix download file ending for csv-without-headers data format (65afba0), closes #871
  • lapis: fix response schema of /phyloSubtree in OpenAPI spec (#1336) (c3c3e75)
  • lapis: fix Swagger UI layout of GET requests (#1217) (70b0089), closes #1193
  • lapis: get rid of logger config deprecation warnings in the log (e7c3908), closes #972
  • lapis: increase maximum string length in JSON parser (#1332) (1765428)
  • lapis: make sure that the downloaded database config has all field that the original file had (#1327) (c10673c)
  • lapis: mutations over time need only aggregatedDataAccessKey (#1303) (baadcee)
  • lapis: never show whitelabel error page (eb03345), closes #890
  • lapis: nucleotideInsertionContains correctly handles segment (4776a3e)
  • lapis: only keep old log files for 30 days (#1111) (66952c5)
  • lapis: pass correctly escaped stop codon to SILO (be1bb87), closes #1105
  • lapis: prevent errors for mutationsOverTime endpoint and potentially other endpoints (#1322) (bed930b)
  • lapis: reject unknown data formats (#1093) (b1cc7fd), closes #1078
  • lapis: return proper error message when lineage definition from SILO is invalid YAML (#1117) (cdf9b63), closes #1104
  • lapis: truncate error details if they are too long (#1334) (b51157d)
  • speed up compressing responses #717 (1624580)
  • test #685 (f52d68d)
  • write empty string to CSV/TSV for null values #708 (c8872ba)

@dependabot dependabot bot force-pushed the dependabot/npm_and_yarn/lapis-docs/multi-dcae87122d branch from cc41b75 to 05b0dc1 Compare October 7, 2025 08:03
@dependabot dependabot bot force-pushed the dependabot/npm_and_yarn/lapis-docs/multi-dcae87122d branch from 05b0dc1 to 8024c83 Compare October 13, 2025 06:44
@dependabot
chore(lapis-docs): bump react and @types/react in /lapis-docs
d7f0827 
Bumps [react](https://github.com/facebook/react/tree/HEAD/packages/react) and [@types/react](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/react). These dependencies needed to be updated together.

Updates `react` from 18.3.1 to 19.2.0
- [Release notes](https://github.com/facebook/react/releases)
- [Changelog](https://github.com/facebook/react/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/react/commits/v19.2.0/packages/react)

Updates `@types/react` from 18.3.12 to 19.2.0
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/react)

---
updated-dependencies:
- dependency-name: react
  dependency-version: 19.2.0
  dependency-type: direct:production
  update-type: version-update:semver-major
- dependency-name: "@types/react"
  dependency-version: 19.2.0
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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@dependabot dependabot bot force-pushed the dependabot/npm_and_yarn/lapis-docs/multi-dcae87122d branch from 8024c83 to d7f0827 Compare October 15, 2025 09:27
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dependabot bot commented on behalf of github Dec 15, 2025

Superseded by #1486.

@dependabot dependabot bot closed this Dec 15, 2025
@dependabot dependabot bot deleted the dependabot/npm_and_yarn/lapis-docs/multi-dcae87122d branch December 15, 2025 19:12
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