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How to use draft with abundance

Status: Open.

#280 In HadrienG/InSilicoSeq;

· izaak-coleman opened on Aug 6, 2025

coverage file seems not working properly in setting --coverage

Status: Open.

#276 In HadrienG/InSilicoSeq;

· kaysahu opened on Apr 9, 2025

Generating reads from multiple draft genomes - output file not found error for concatenate

Status: Open.

#275 In HadrienG/InSilicoSeq;

· sreerampeela opened on Jan 8, 2025

iss is skipping certain contigs during simulation

Status: Open.

#274 In HadrienG/InSilicoSeq;

· tslaird opened on Nov 14, 2024

ImportError: cannot import name 'gc_fraction' from 'Bio.SeqUtils'

Status: Open.

#273 In HadrienG/InSilicoSeq;

· ammaraziz opened on Nov 8, 2024

Inability to Generate Perfect Reads

Status: Open.

#272 In HadrienG/InSilicoSeq;

· Shruteek opened on Sep 18, 2024

Simulating higher read depth leads to a KeyError: 'x'

Status: Open.

#271 In HadrienG/InSilicoSeq;

· zoey-rw opened on Sep 16, 2024

FileNotFoundError in concatenate

Status: Open.

#269 In HadrienG/InSilicoSeq;

· jjkoehorst opened on Aug 2, 2024

Fragment length doesn't change the read generation behaviour

Status: Open.

#268 In HadrienG/InSilicoSeq;

· pabviana opened on Jul 15, 2024

Abundance file shows more genomes than are used

need answerissues that need clarifications from OPissues that need clarifications from OP

Status: Open.

#262 In HadrienG/InSilicoSeq;

· Naturalist1986 opened on May 27, 2024

Simulate (targeted) sequencing of single genes

need answerissues that need clarifications from OPissues that need clarifications from OP

Status: Open.

#258 In HadrienG/InSilicoSeq;

· FreekManders opened on Mar 13, 2024

temporary vcfs are not cleaned up

bug

Status: Open.

#254 In HadrienG/InSilicoSeq;

· HadrienG opened on Feb 23, 2024