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Visualisations#23

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javiersanchezlorente wants to merge 7 commits intomainfrom
visualisations
Open

Visualisations#23
javiersanchezlorente wants to merge 7 commits intomainfrom
visualisations

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@javiersanchezlorente
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Allow visualisation of Regenie Output.

New files:

  • Data dictionary of UK Biobank showcase, and custom
  • Update functions for phenotyping
  • New notebook for visualising forest plots of both Binary and quantitative traits both grouped by phenotype or by mask

Obtained from gogoGPCR2, for forest plot visualisation
Update to improve visualisation and allow plotting by phenotype (plot_BT/plot_QT) or by mask (plot_BT_group_by_mask/plot_QT_group_by_mask)
ShowCase dictionary is updated with the current one, and custom is empty
Update pheno_search function to consider new column names and to give a "Phenotype not found" instead of an error
Notebook to visualize Regenie output either group by mask or by phenotype, both for binary and quantitative traits
@javiersanchezlorente javiersanchezlorente added the enhancement New feature or request label Oct 4, 2024
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@jsture jsture left a comment

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Where are the Data dictionary files from?
Make it clear that the forest plots are for a specific project or make them reusable

@javiersanchezlorente
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Data dictionaries are from gogoGPCR, can also be obtained from: https://biobank.ctsu.ox.ac.uk/crystal/schema.cgi?id=1

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