76 ips ehds2 optimized #77
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added 6 commits
December 20, 2025 11:44
… Mortality table formatting; add images; update index and sushi-config navigation. Exclude run-docker.sh and template changes from this commit.
…otes and full-width styling.
…equired elements for Procedure, MedicationStatement, Immunization, Allergy, Device, Mortality.
…d IPS→FHIR mapping table; add CDA examples aligned to FHIR; add run-docker publisher helper.
alan-zhang-22
requested review from
Martin-Rosner,
Copilot,
lorifourquet and
oliveregger
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Pull request overview
This PR adds a comprehensive IPS EHDS2 (International Patient Summary for European Health Data Space secondary use) example to the de-identification handbook. The new example demonstrates applying the handbook's de-identification process framework to EHDS2-compliant secondary use scenarios involving IPS FHIR and mortality data.
Key changes:
- Adds detailed IPS EHDS2 example with multi-stage de-identification workflow (Stage 1: Data Holder pseudonymization, Stage 2: HDAB anonymization)
- Includes comprehensive element-by-element de-identification specifications for IPS resources
- Provides both FHIR and CDA implementation examples with before/after transformation samples
Reviewed changes
Copilot reviewed 12 out of 16 changed files in this pull request and generated 4 comments.
Show a summary per file
| File | Description |
|---|---|
sushi-config.yaml |
Adds IPS EHDS2 example page to site navigation menu and pages configuration |
run-docker.sh |
Introduces Docker-based FHIR IG Publisher execution script with configurable resource controls |
references/marker-single-out/.../meta.json |
Adds metadata file for IPS FHIR de-identification reference document |
input/pagecontent/ips-ehds-example.md |
Main IPS EHDS2 example content with methodology, FHIR/CDA examples, and transformation tables |
input/pagecontent/index.md |
Updates index to reference new IPS EHDS2 example and fixes section title |
input/pagecontent/dicom-example.md |
Fixes broken reference link (capitalization) |
input/pagecontent/concepts.md |
Fixes broken internal anchor link |
Comments suppressed due to low confidence (1)
input/pagecontent/ips-ehds-example.md:1
- Corrected spelling errors: 'eUects' to 'effects', 'aUect' to 'affect', and 'aUecting' to 'affecting'.
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Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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Closes #76
📑 Description
The base version of IPS EHDS is purely based on the word version of the use case. The problem is that the word version does not fit into the new structure of the de-id handbook. Thus, we need to reorganize the structure of the chapter and also add sub sections requried.
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ℹ Additional Information