Skip to content

Download NetCDF source from Github #14

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
hannes-holey wants to merge 5 commits into
base: master
Choose a base branch
from
Open

Download NetCDF source from Github #14

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
3276299
Download NetCDF source from Github
hannes-holey Jul 25, 2022
927bcc6
ENH: Add script t split NetCDF Amber trajectory
hannes-holey Jul 25, 2022
94df921
MAINT: allow trajectories without type specified
hannes-holey Jul 25, 2022
a53f1e8
Revert "MAINT: allow trajectories without type specified"
hannes-holey Jul 25, 2022
9209b40
Revert "ENH: Add script t split NetCDF Amber trajectory"
hannes-holey Jul 25, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions container_recipes/STACK/pnetcdf-1.12.2_fftw-3.3.9.def
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -69,8 +69,8 @@ From: mpibase.sif

# We need to compile NetCDF ourselves because there is no package that has
# parallel PnetCDF and HDF5 enabled.
rm -rf ${BUILDDIR}/netcdf-c-build
curl https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-${SING_NETCDF4_VERSION}.tar.gz | tar -xzC ${BUILDDIR}
rm -rf ${BUILDDIR}/netcdf-c-build ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
git clone -b v${SING_NETCDF4_VERSION} https://github.com/Unidata/netcdf-c.git ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
mkdir -p ${BUILDDIR}/netcdf-c-build
cd ${BUILDDIR}/netcdf-c-build
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX} -DUSE_PARALLEL=ON -DENABLE_PARALLEL4=ON -DENABLE_PNETCDF=ON -DENABLE_TESTS=OFF ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
Expand Down
4 changes: 2 additions & 2 deletions container_recipes/STACK/pnetcdf-1.12.2_fftw-3.3.9_pfft-master.def
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -80,8 +80,8 @@ From: mpibase.sif

# We need to compile NetCDF ourselves because there is no package that has
# parallel PnetCDF and HDF5 enabled.
rm -rf ${BUILDDIR}/netcdf-c-build
curl https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-${SING_NETCDF4_VERSION}.tar.gz | tar -xzC ${BUILDDIR}
rm -rf ${BUILDDIR}/netcdf-c-build ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
git clone -b v${SING_NETCDF4_VERSION} https://github.com/Unidata/netcdf-c.git ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
mkdir -p ${BUILDDIR}/netcdf-c-build
cd ${BUILDDIR}/netcdf-c-build
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${PREFIX} -DUSE_PARALLEL=ON -DENABLE_PARALLEL4=ON -DENABLE_PNETCDF=ON -DENABLE_TESTS=OFF ${BUILDDIR}/netcdf-c-${SING_NETCDF4_VERSION}
Expand Down