SET-extractor is a python program to identify and extract the SET domain sequence within protein sequences.
#USAGE
./SET_extractor.py infile(.faa) output
There are only two external dependencies that should be installed before using PcGs-finder:
• HMMER: biosequence analysis using profile hidden Markov model. http://hmmer.org
• fasta_formatter. apt-get install fastx-toolkit
#OUTPUTS
-
a bed file with the SET domain's coordinates.
-
SET sequence file.