Tutorials

All the tutorials are in jupyter notebook format.
You are welcome to update/improve previous tutorials or add your own.

• Launching notebooks
• Tutorial-1 - New member's guidebook
• Tutorial-2 - Freesurfer
• Tutorial-3 - Narval
• Tutorial-4 - Lab computers

Launching

Click on the links with 🚀

Alternatively, go to Google Colab

In Github section, print the repository's url:

https://github.com/Neuro-iX/Tutorials

Alternatively, you can launch tutorials using Jupyterlab.
See Tutorial-1 - New member's guidebook.

Tutorial-1

🚀 New member's guidebook

Learning outcomes

0. MonETS account setup
1. Help updating Neuro-iX.github.io with your information
2. New account to access Narval's compute nodes and Neuro-iX's Github
   a) Create an account on GitHub and Compute Canada Database (CCDB)
   b) Configure your ssh connexion to Narval cluster and GitHub repository
3. Setup Miniconda, Git, Datalad and Jupyterlab on your laptop
   a) Understand Miniconda, Git, DataLad and JupyterLab
   b) Install Miniconda, Git, DataLad and JupyterLab
   c) Basics for Git, DataLad, JupyterLab and GitHub in bash
4. Setup a virtual machine on your laptop
5. Bonus: Some interesting applications and websites

Tutorial-2

🚀 Freesurfer

Learning outcomes

0. Freesurfer overview
1. Freesurfer installation/build
2. Freesurfer tutorials

Tutorial-3

🚀 Narval

Learning outcomes

0. CCDB account setup and ssh connection to Narval
1. Create a GLobus account for Data transfert (optional)
2. Structure and Datasets in Narval
   a) Storage and file management on Narval
   b) Datasets in data
3. Basic commands on a Narval node
4. SLURM job templates

Tutorial-4

🚀 Lab computers

Learning outcomes

0. Structure of office computers
1. List of softwares installed