GQC

This project aims to perform simple genome quality control measures on protein coding genes.

Goal

• Download genomes in standardized formats
  • FASTA
  • GFF3
  • Perhaps some source-specific tweaks
• Load them into a SQLite database
• Train standard sequence models on genes
• Use sequence models to score genes
• Report genome features, patterns, and outliers
• HTML output?
• Automate everything

CLI should eventually look like this:

gqc <fasta> <gff> <output dir>