INTRONOMICON

The Book of Introns

Quick Start

Download the files. If you run this again later, it skips over files already present.

python3 downloader build --verbose

Build the database for worm introns.

python3 database-builder.py worm.db build

In the order of use (-ish)

completely new downloader.py
database-builder.py needs to be refactored to fit
database will change substantially
- might not store meta-data
- more intron focused

Name		Name	Last commit message	Last commit date
Latest commit History 148 Commits
arch		arch
meta-training		meta-training
.gitignore		.gitignore
L4.txt		L4.txt
README.md		README.md
cmpgrp.pl		cmpgrp.pl
compare-groupings.py		compare-groupings.py
cultist.py		cultist.py
database-builder.py		database-builder.py
downloader.py		downloader.py
extracts.tar.gz		extracts.tar.gz
genecount-extractor		genecount-extractor
gsenious.py		gsenious.py
gsm_compare_table		gsm_compare_table
gsm_raw_data		gsm_raw_data
intron-injector.py		intron-injector.py
intronomicon-align.yml		intronomicon-align.yml
intronomicon-db.yml		intronomicon-db.yml
meta-hints.py		meta-hints.py
metasolver.yml		metasolver.yml
name-resolver.py		name-resolver.py
nameloader.pl		nameloader.pl
ncbi_reader.py		ncbi_reader.py
smgfinder.py		smgfinder.py
worm.db		worm.db
worm_genes.json		worm_genes.json
worm_genes.txt		worm_genes.txt
xpxp.py		xpxp.py