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Adding metrics for checking case-insensitive sample/source names #6875

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Merged
XingY merged 1 commit into from
Jul 24, 2025
Merged

Adding metrics for checking case-insensitive sample/source names #6875

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22 changes: 22 additions & 0 deletions experiment/src/org/labkey/experiment/ExperimentModule.java
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Original file line number Diff line number Diff line change
Expand Up @@ -726,6 +726,28 @@ WHERE op.propertyid IN (
"(SELECT name, cpastype FROM exp.material WHERE cpastype <> 'Material' GROUP BY name, cpastype HAVING COUNT(*) > 1) d").getObject(Long.class));
results.put("duplicateSpecimenMaterialNameCount", new SqlSelector(schema, "SELECT COUNT(*) as duplicateCount FROM " +
"(SELECT name, cpastype FROM exp.material WHERE cpastype = 'Material' GROUP BY name, cpastype HAVING COUNT(*) > 1) d").getObject(Long.class));
String duplicateCaseInsensitiveSampleNameCountSql = """
SELECT COUNT(*) FROM
(
SELECT 1 AS found
FROM exp.material
WHERE materialsourceid IS NOT NULL
GROUP BY LOWER(name), materialsourceid
HAVING COUNT(*) > 1
) AS duplicates
""";
String duplicateCaseInsensitiveDataNameCountSql = """
SELECT COUNT(*) FROM
(
SELECT 1 AS found
FROM exp.data
WHERE classid IS NOT NULL
GROUP BY LOWER(name), classid
HAVING COUNT(*) > 1
) AS duplicates
""";
results.put("duplicateCaseInsensitiveSampleNameCount", new SqlSelector(schema, duplicateCaseInsensitiveSampleNameCountSql).getObject(Long.class));
results.put("duplicateCaseInsensitiveDataNameCount", new SqlSelector(schema, duplicateCaseInsensitiveDataNameCountSql).getObject(Long.class));

results.put("dataClassCount", new SqlSelector(schema, "SELECT COUNT(*) FROM exp.dataclass").getObject(Long.class));
results.put("dataClassRowCount", new SqlSelector(schema, "SELECT COUNT(*) FROM exp.data WHERE classid IN (SELECT rowid FROM exp.dataclass)").getObject(Long.class));
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