Linelist Aggregation Epimap

Data transformation and aggregation of Linelist for the Epimap

Installation

I recommend you to install a Python environment with conda, virtualenv or pipenv.

Conda

For example with conda, download and install miniconda

Option 1 : Using env.yml

Create the conda environment

conda create -n epimap -f env.yml

Activate the conda environment

activate epimap

Option 2 : Installing package by package

Create a conda environment

conda create -n epimap python=3.8

Activate the conda environment

activate epimap

Install dependencies

conda install pandas==1.0.3
conda install xlrd==1.2.0
conda install openpyxl==3.0.3
conda install python-levenshtein==0.12.0

Virtualenv or pipenv

Setup a virtualenv or pipenv

Install dependencies

pip install -r requirements.txt

Usage

Run the Python script aggregator.

python src/aggregator.py 

Tests

Go to the tests directory and run unittest

cd tests
python -m unittest discover

License

The project has an MIT license.