Here, you will find a collection of repositories focused on open, reproducible science.

EecSeq https://github.com/MarineEvoEcoLab/EecSeq

• The lastest and greatest protocol and bioinformatics for EecSeq

Public Resources https://github.com/MarineEvoEcoLab/PublicResourcesSection

• This repository has a full description of one of our experimental aquaculture systems, capable of cycling pH and dissolved oxygen on a diurnal cycle

Haplotig-masked Eastern Oyster Genome https://github.com/The-Eastern-Oyster-Genome-Project/2022_Eastern_Oyster_Haplotig_Masked_Genome

• Repository for Puritz et al. 2022 "A second unveiling: haplotig masking of existing genomic resources improves population-level inference"

dDocent: a bash pipeline for RAD sequencing https://github.com/jpuritz/dDocent

• Also see dDocent.com for documentation

Seascape genomics of eastern oyster is Narragansett Bay https://github.com/amyzyck/EecSeq_NB_EasternOyster

• Expressed Exome Capture Sequencing (EecSeq) bioinformatic pipeline for a seascape genomics analysis assessing the effects of sewage effluent and coastal acidification on populations of the Eastern Oyster in Narragansett Bay

• PI
  • Jonathan Puritz
• Postdocs
  • Alex Hooks
• Lab Manager (2018-2021)
  • Maggie Schedl
• Grad Students
  • Amy Zyck
  • Jacob Green
  • Natalie Ameral
  • Megan Guidry
  • Gabe Barret
• Undergrads