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Bug: ESP and ERP segment ordering mismatch

Status: Open.

#9 In McIntyre-Lab/TranD;

· mdgaran opened on Feb 2, 2026

Clarification on Intron Retention Heatmap

Status: Open.

#8 In McIntyre-Lab/TranD;

· RacheliHadjez opened on May 28, 2025

Problem with ER IDs in 1GTF geneMode when every transcript except 1 is removed due to IR

Status: Open.

#7 In McIntyre-Lab/TranD;

· KSB54 opened on Nov 13, 2024

ir_transcripts.csv is empty

Status: Open.

#6 In McIntyre-Lab/TranD;

· KSB54 opened on May 2, 2024

Meta-Issue: GFFCompare may assign transcripts to incorrect genes

Status: Open.

#5 In McIntyre-Lab/TranD;

· KSB54 opened on Apr 22, 2024

Genes with one transcript are not included in anyway when running TranD in pairwise mode.

Status: Open.

#4 In McIntyre-Lab/TranD;

· KSB54 opened on Apr 22, 2024