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Original file line number Diff line number Diff line change
@@ -0,0 +1,80 @@
methurator_summary:
metadata:
date_generated: '2026-01-22T12:57:56.027724'
methurator_version: 0.1.7
command: methurator downsample
options:
bam_files:
- tests/data/Ecoli.csorted.bam
outdir: tests/data
fasta: tests/data/genome.fa
genome: null
downsampling_percentages:
- 0.1
- 0.2
- 0.4
- 0.6
- 0.8
- 1
minimum_coverage: [1, 3]
rrbs: true
threads: 6
keep_temporary_files: false
reads_summary:
- Ecoli:
- [0.1, 2]
- [0.2, 4]
- [0.4, 6]
- [0.6, 6]
- [0.8, 8]
- [1.0, 10]
cpgs_summary:
- Ecoli:
- minimum_coverage: 1
data:
- [0.1, 11]
- [0.2, 18]
- [0.4, 21]
- [0.6, 21]
- [0.8, 32]
- [1.0, 41]
- minimum_coverage: 3
data:
- [0.1, 0]
- [0.2, 0]
- [0.4, 0]
- [0.6, 0]
- [0.8, 0]
- [1.0, 0]
saturation_analysis:
- Ecoli:
- minimum_coverage: 1
fit_success: true
beta0: 32.03862722586334
beta1: 2.07723659313063
asymptote: 50
saturation: 71.9
data:
- [0.0, 0, 0.0, false]
- [0.1, 7, 13.1, false]
- [0.2, 13, 25.2, false]
- [0.4, 22, 44.4, false]
- [0.6, 29, 57.3, false]
- [0.8, 33, 65.9, false]
- [1.0, 36, 71.9, false]
- [1.2, 38, 76.2, true]
- [1.4, 40, 79.4, true]
- [1.6, 41, 81.9, true]
- [1.8, 42, 83.9, true]
- [2.0, 43, 85.5, true]
- minimum_coverage: 3
fit_success: false
fit_error: Invalid asymptote value
data:
- [0.0, 0, null, false]
- [0.1, 0, null, false]
- [0.2, 0, null, false]
- [0.4, 0, null, false]
- [0.6, 0, null, false]
- [0.8, 0, null, false]
- [1.0, 0, null, false]
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