Updated Docs Site with new Active Release Manifest #288
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Update MAF_Format doc per https://gdc-ctds.atlassian.net/browse/DOC-420
Updating API User's Guide per https://gdc-ctds.atlassian.net/browse/DOC-229
Updating API Appendix A per https://gdc-ctds.atlassian.net/browse/DOC-200
Add cnv_change_5_category to API documentation
* PEAR-2284 - add apps menu to doc site * PEAR-2284 - Move app menu out to its own partial * PEAR-2284 - move extra js to mkdocs.yml
Updating API User's Guide
Add cnv_change_5_category to API documentation
Updating API Appendix A
Roentgen release notes draft
Co-authored-by: Bill Wysocki <wwysoc2@uchicago.edu>
Scrna guide
scRNA-Seq Gene Expression Endpoints - Data Analysis API doc
* PEAR-2352 remove mvs app and update links In order for the link to open in a new tab, I had to use HTML injection. This happens at compile-time, not at run-time. It is possible that this breaks if mkdocs changing their site generation to escape HTML. The gdcmvs app can be removed from the doc site. The MVS hosted tool will be used instead. The remaining links are updated. A similar html injection technique was needed for the of the links. In markdown files, we were able to use the attr_list extension. This would be the preferred approach.
…GA_Barcode DOC-281: Encyclopedia TCGA_Barcode fix
…i_operator DOC-119: excludeifany api operator
…_MAF_format_documentation DOC-480: Update the One_Consequence definition in the MAF Format documentation
DOC-507 properly hide old docs from view
DR45 release notes
Happy New Year 2026!
…emplate Uhlenbeck portal release notes template
DOC-509: Fixed source of survival info
VCF release note clarification
…ase_notes_template Revert "Uhlenbeck portal release notes template"
…portal_release_notes_template Revert "Revert "Uhlenbeck portal release notes template""
…ev_guide DOC-481: Update Portal developer guide documentation text for gender-to-sex changes
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