CMS Caproto Sim

.ci/apply-autosettings.sh

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+#!/bin/bash
+
+# Check if the file exists
+if [ ! -f ".ci/auto_settings.sav" ]; then
+    echo "Error: auto_settings.sav file not found"
+    exit 1
+fi
+
+# Read the file line by line
+while IFS= read -r line; do
+    # Skip empty lines
+    if [ -n "$line" ]; then
+        # Execute caput command with the line contents as arguments
+        caput $line
+    fi
+done < ".ci/auto_settings.sav"

.ci/auto_settings.sav

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+XF:11BMA-BI{FS:1-Cam:1}cam1:PortName cam01
+XF:11BMA-BI{FS:2-Cam:1}cam1:PortName cam02
+XF:11BMB-BI{FS:3-Cam:1}cam1:PortName cam03
+XF:11BMB-BI{FS:4-Cam:1}cam1:PortName cam04
+XF:11BMB-BI{OnAxis-Cam:1}cam1:PortName cam05
+XF:11BMA-BI{FS:2-Cam:1}Proc1:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Proc1:PortName Proc1
+XF:11BMA-BI{FS:2-Cam:1}ROI1:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}ROI1:PortName ROI1
+XF:11BMA-BI{FS:2-Cam:1}ROI2:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}ROI2:PortName ROI2
+XF:11BMA-BI{FS:2-Cam:1}ROI3:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}ROI3:PortName ROI3
+XF:11BMA-BI{FS:2-Cam:1}ROI4:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}ROI4:PortName ROI4
+XF:11BMA-BI{FS:2-Cam:1}Stats1:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Stats1:PortName Stats1
+XF:11BMA-BI{FS:2-Cam:1}Stats2:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Stats2:PortName Stats2
+XF:11BMA-BI{FS:2-Cam:1}Stats3:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Stats3:PortName Stats3
+XF:11BMA-BI{FS:2-Cam:1}Stats4:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Stats4:PortName Stats4
+XF:11BMA-BI{FS:2-Cam:1}Stats5:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Stats5:PortName Stats5
+XF:11BMA-BI{FS:2-Cam:1}Trans1:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}Trans1:PortName Trans1
+XF:11BMA-BI{FS:2-Cam:1}image1:NDArrayPort cam02
+XF:11BMA-BI{FS:2-Cam:1}image1:PortName image1
+XF:11BMB-BI{FS:3-Cam:1}Proc1:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Proc1:PortName Proc1
+XF:11BMB-BI{FS:3-Cam:1}ROI1:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}ROI1:PortName ROI1
+XF:11BMB-BI{FS:3-Cam:1}ROI2:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}ROI2:PortName ROI2
+XF:11BMB-BI{FS:3-Cam:1}ROI3:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}ROI3:PortName ROI3
+XF:11BMB-BI{FS:3-Cam:1}ROI4:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}ROI4:PortName ROI4
+XF:11BMB-BI{FS:3-Cam:1}Stats1:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Stats1:PortName Stats1
+XF:11BMB-BI{FS:3-Cam:1}Stats2:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Stats2:PortName Stats2
+XF:11BMB-BI{FS:3-Cam:1}Stats3:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Stats3:PortName Stats3
+XF:11BMB-BI{FS:3-Cam:1}Stats4:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Stats4:PortName Stats4
+XF:11BMB-BI{FS:3-Cam:1}Stats5:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Stats5:PortName Stats5
+XF:11BMB-BI{FS:3-Cam:1}Trans1:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}Trans1:PortName Trans1
+XF:11BMB-BI{FS:3-Cam:1}image1:NDArrayPort cam03
+XF:11BMB-BI{FS:3-Cam:1}image1:PortName image1
+XF:11BMB-BI{FS:4-Cam:1}Proc1:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Proc1:PortName Proc1
+XF:11BMB-BI{FS:4-Cam:1}ROI1:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}ROI1:PortName ROI1
+XF:11BMB-BI{FS:4-Cam:1}ROI2:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}ROI2:PortName ROI2
+XF:11BMB-BI{FS:4-Cam:1}ROI3:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}ROI3:PortName ROI3
+XF:11BMB-BI{FS:4-Cam:1}ROI4:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}ROI4:PortName ROI4
+XF:11BMB-BI{FS:4-Cam:1}Stats1:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Stats1:PortName Stats1
+XF:11BMB-BI{FS:4-Cam:1}Stats2:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Stats2:PortName Stats2
+XF:11BMB-BI{FS:4-Cam:1}Stats3:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Stats3:PortName Stats3
+XF:11BMB-BI{FS:4-Cam:1}Stats4:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Stats4:PortName Stats4
+XF:11BMB-BI{FS:4-Cam:1}Stats5:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Stats5:PortName Stats5
+XF:11BMB-BI{FS:4-Cam:1}Trans1:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}Trans1:PortName Trans1
+XF:11BMB-BI{FS:4-Cam:1}image1:NDArrayPort cam04
+XF:11BMB-BI{FS:4-Cam:1}image1:PortName image1

.ci/bl-specific.sh

@@ -1,3 +1,20 @@
 #!/bin/bash
 
-# cp -v <...> ~/.ipython/profile_${TEST_PROFILE}/
+set -veo pipefail
+
+# Per https://stackoverflow.com/a/66982842:
+sudo echo "127.0.0.1 info.cms.nsls2.bnl.gov" | sudo tee -a /etc/hosts
+cat /etc/hosts
+
+ping -c 5 info.cms.nsls2.bnl.gov
+echo "" | telnet info.cms.nsls2.bnl.gov 6379
+
+# Copy config files into the dummy IPython profile:
+mkdir -v -p ~/.ipython/profile_test/startup/
+cp -v startup/.cms_config ~/.ipython/profile_test/startup/
+
+# Create pilatus and /nsls2 dir trees:
+sudo mkdir -v -p /nsls2/
+sudo chown -R -v $USER: /nsls2/
+mkdir -v -p $HOME/cms-epics-containers/pilatus-data/data/
+ln -sv $HOME/cms-epics-containers/pilatus-data/data/ /nsls2/

.ci/cms.yml

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+metadatastore:
+    module: 'databroker.headersource.mongo'
+    class: 'MDS'
+    config:
+        host: 'localhost'
+        port: 27017
+        database: 'test-datastore'
+        timezone: 'US/Eastern'
+assets:
+    module: 'databroker.assets.mongo'
+    class: 'Registry'
+    config:
+        host: 'localhost'
+        port: 27017
+        database: 'test-filestore'
+

.ci/commands.py

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+cms.setMetadata()
+%run -i user_TSAXSWAXS.py
+
+sam = SampleGISAXS('test')
+detselect(pilatus2M)
+sam.measureIncidentAngle(0.1, exposure_time=1)
+
+sam.xr(1)
+sam.thr(0.1)
+sam.thabs(0.2)
+
+cms.setMetadata()
+sam.measure(1)
+cms.modeMeasurement()
+wbs()
+sam.measure(1)

.ci/drop-in.py

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+import numpy as np
+
+caput(beam.mono_bragg_pv, 1.03953)
+pilatus2M.tiff.create_directory.set(-20)
+sam = SampleGISAXS('test')
+detselect(pilatus2M)
+
+RE.md.update({'scan_id': 1})
+
+pilatus2M.cam.num_images.put(1)
+
+uid, = RE(bp.count([pilatus2M], num=3))
+
+hdr = db[uid]
+print(hdr.table(fill=True))
+
+data = np.array(list(hdr.data("pilatus2M_image")))
+print(f"{data = }\n{data.shape = }")

.ci/kafka-config.sh

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+#!/bin/bash
+
+set -veo pipefail
+
+# Kafka config:
+cat << EOF > kafka.yml
+---
+abort_run_on_kafka_exception: false
+bootstrap_servers:
+    - localhost:9092
+runengine_producer_config:
+    security.protocol: PLAINTEXT
+EOF
+
+mkdir -v -p $HOME/.config/bluesky/
+mv -v kafka.yml $HOME/.config/bluesky/kafka.yml
+cat $HOME/.config/bluesky/kafka.yml

.ci/tiled-config.sh

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+#!/bin/bash
+
+set -veo pipefail
+
+# Tiled profile config:
+
+tiled_profiles_dir="$HOME/.config/tiled/profiles/"
+beamline_acronym="cms"
+
+mkdir -v -p ${tiled_profiles_dir}
+
+cat << EOF > ${tiled_profiles_dir}/profiles.yml
+${beamline_acronym:-local}:
+  direct:
+    authentication:
+      allow_anonymous_access: true
+    trees:
+    - tree: databroker.mongo_normalized:Tree.from_uri
+      path: /
+      args:
+        uri: mongodb://localhost:27017/metadatastore-local
+        asset_registry_uri: mongodb://localhost:27017/asset-registry-local
+EOF
+
+cat ${tiled_profiles_dir}/profiles.yml