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Improve logging#497

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ssjunnebo merged 4 commits intoNationalGenomicsInfrastructure:masterfrom
ssjunnebo:logging_id
Nov 7, 2025
Merged

Improve logging#497
ssjunnebo merged 4 commits intoNationalGenomicsInfrastructure:masterfrom
ssjunnebo:logging_id

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@ssjunnebo
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  • Add a timestamp of when the script started as an identifier in all logging entries
  • In taca analysis and taca backup, add a log entry when the script starts and ends

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codecov bot commented Nov 6, 2025

Codecov Report

❌ Patch coverage is 47.05882% with 9 lines in your changes missing coverage. Please review.
✅ Project coverage is 26.06%. Comparing base (b20aeae) to head (0a29fd5).
⚠️ Report is 6 commits behind head on master.

Files with missing lines Patch % Lines
taca/backup/backup.py 0.00% 4 Missing ⚠️
taca/analysis/analysis_element.py 40.00% 3 Missing ⚠️
taca/analysis/analysis_nanopore.py 50.00% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #497      +/-   ##
==========================================
+ Coverage   25.99%   26.06%   +0.06%     
==========================================
  Files          37       37              
  Lines        5562     5578      +16     
==========================================
+ Hits         1446     1454       +8     
- Misses       4116     4124       +8     

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@ssjunnebo ssjunnebo requested review from aanil and alneberg and removed request for alneberg November 6, 2025 09:18
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👍

@ssjunnebo ssjunnebo merged commit a36d82b into NationalGenomicsInfrastructure:master Nov 7, 2025
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2 participants