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Set mask to N* if read or index is 0 #501

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Merged
ssjunnebo merged 4 commits into from
Feb 4, 2026
Merged

Set mask to N* if read or index is 0 #501

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Set mask to N* if read or index is 0
ssjunnebo Feb 3, 2026
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Versioning
ssjunnebo Feb 3, 2026
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prettier
ssjunnebo Feb 3, 2026
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ssjunnebo Feb 3, 2026
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10 changes: 7 additions & 3 deletions VERSIONLOG.md
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Original file line number Diff line number Diff line change
@@ -1,14 +1,18 @@
# TACA Version Log

##20260127.1
## 20260203.1

Set mask to N\* if read or index is 0 for AVITI

## 20260127.1

Email when MismatchThreshold is set to 0 for AVITI runs

##20251127.1
## 20251127.1

Enable archiving of Aviti Teton runs to PDC

##20251121.1
## 20251121.1

Exclude pod5 from delivery by default

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2 changes: 1 addition & 1 deletion taca/__init__.py
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@@ -1,3 +1,3 @@
"""Main TACA module"""

__version__ = "1.6.15"
__version__ = "1.6.16"
4 changes: 2 additions & 2 deletions taca/element/Element_Runs.py
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Expand Up @@ -64,9 +64,9 @@ def get_mask(
], f"Mask prefix {prefix} not recognized"
assert keep in ["bases", "Ns"], f"Keep option {keep} not recognized"

# Handle no-input cases
# Handle no-input cases (e.g. read setups like 144nt(R1)-6nt(I1)-0nt(I2)-0nt(R2))
if seq == "":
mask = f"{prefix}N{cycles_used}"
mask = f"{prefix}N*"
return mask

# Define dict to convert base to mask classifier
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