seapodym-parallel

Code development of population dynamics models aka SEAPODYM with parallel runs and parameter estimations

Prerequisites

You will need:

• A C++ compiler (e.g. g++) and MPI libraries installed (e.g. OpenMPI)
• CMake
• ADMB 13.1 (13.2 will not work)
• spdlog. On Ubuntu: apt install libspdlog-dev.
• libfmt. On Ubuntu: apt install libfmt-dev

How to build the seapodym-parallel

git clone  git@github.com:PacificCommunity/seapodym-parallel
cd seapodym-parallel
mkdir build
cd build
cmake -DADMB_HOME=<path to admb> -D CMAKE_INSTALL_PREFIX=<install dir> ..
cmake --build .
cmake --install .

How to build the documention

In the build directory

cmake --build . --target doc_doxygen

This will generate the documention in the top source directory docs.

Documentation

Documentation is built and pushed after every code change to here.

How to test the code

In the build directory

ctest