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@anna-parker
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Hi!
I added a function to write simulated evolved sequences to FASTA files and additionally added an 'evolved' key to each node's data dictionary while simulating sequences to allow for quick determination if a branch has mutations on it. I also noticed you still have Manifest.toml on github and I believe this should be in the .gitignore as it contains system specific information, so I modified that :-)

@PierreBarrat
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Looks good.
About writing the sequences to fasta, there is already the function write_fasta in the Sequences module:

function write_fasta(

It's probably best to have only one function for this?

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2 participants