IEBH-353: Sync with the latest changes

[vmoshynskyi]

Add the latest changes from the pilot repo.

[Copilot]

Pull request overview

This PR synchronizes the repository with the latest changes from the pilot repo, primarily updating development tooling and CI/CD infrastructure while documenting security improvements to the file handling workflow.

Key Changes:

• Upgraded pre-commit from ^2.19.0 to ^3.5.0 and enabled docformatter hook (v1.7.7) in pre-commit configuration
• Added comprehensive GitHub Actions CI/CD pipeline with automated testing, coverage reporting, and binary releases
• Updated version to 2.2.7 with security-focused workflow changes (restricted core zone uploads and greenroom zone downloads)

Reviewed changes

Copilot reviewed 5 out of 6 changed files in this pull request and generated 5 comments.

Show a summary per file

File	Description
pyproject.toml	Upgrades pre-commit dependency from ^2.19.0 to ^3.5.0
app/resources/custom_help.py	Updates version to 2.2.7 and documents security changes to file handling workflow
README.md	Removes trailing whitespace at end of file
.pre-commit-config.yaml	Enables docformatter hook (v1.7.7) for automatic docstring formatting
.github/workflows/hdc-pipeline.yml	Adds new CI/CD pipeline with testing, coverage reporting, and binary build/release automation

---

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

You can also share your feedback on Copilot code review for a chance to win a $100 gift card. Take the survey.

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	0	0	100%
pilotcli.py	0	31	0%	7, 9–10, 12–16, 19–23, 25–30, 33–41, 44–46
commands
__init__.py	0	0	100%
container_registry.py	0	47	0%	7, 9–12, 15–16, 18, 21–26, 29–35, 38–46, 49–55, 58–67
dataset.py	0	90	0%	7–8, 10–15, 18–19, 21, 24–25, 33–35, 44–49, 51–59, 61–71, 74–78, 87–91, 93–102, 104–114, 117–120, 128–138, 140–141
entry_point.py	0	71	0%	7, 9–10, 12–29, 32–34, 37–39, 42–46, 49–53, 56–60, 63–66, 69–71, 74–77, 80–97
file.py	0	75	62%	38, 136, 139, 142, 161–162, 164–167, 193, 195, 268–275, 277, 279, 292–298, 300, 327–334, 336, 370–376, 378–383, 385–397, 399–402, 404–406, 408–410
project.py	0	40	0%	7–8, 10–13, 16–17, 19, 22–25, 33, 41, 50–54, 56–64, 66–76
use_config.py	0	13	0%	7, 9–11, 14–15, 17, 20–22, 29–31
user.py	0	30	0%	7, 9–15, 18–19, 21, 24–30, 32, 34, 37–38, 40, 43–44, 53–57
configs
__init__.py	0	0	100%
app_config.py	0	0	100%
user_config.py	0	13	80%	51, 60, 64, 68, 72, 76, 80, 84, 88, 92, 96, 100, 104
models
__init__.py	0	0	100%
convert_type.py	0	8	0%	7, 9, 12–17
service_meta_class.py	0	1	80%	11
singleton.py	0	0	100%
upload_form.py	0	28	60%	12, 27, 31, 35, 39, 43, 47, 51, 55, 59, 63, 67, 71, 75, 79, 83, 87, 91, 95, 99, 127, 140–146
resources
__init__.py	0	0	100%
custom_error.py	0	0	100%
custom_help.py	0	0	100%
services
__init__.py	0	0	100%
services/container_registry_manager
__init__.py	0	0	100%
container_registry_manager.py	0	131	0%	7, 9, 11–16, 19–22, 24–28, 30–35, 37–46, 48–62, 64–66, 68–84, 86–88, 90–101, 103–105, 107–112, 127–138, 142–145, 147–164, 166, 168–171
services/crypto
__init__.py	0	0	100%
crypto.py	0	19	40%	36, 43–48, 58–60, 67–73, 75, 77
services/dataset_manager
__init__.py	0	0	100%
dataset_detail.py	0	23	70%	44, 46, 63, 70–75, 77–79, 81–90, 92
dataset_download.py	0	129	0%	7–10, 12–13, 15–22, 24, 27–37, 39–42, 47–53, 55–57, 59–62, 67–73, 75–77, 79–80, 83–88, 90–91, 93–100, 102, 104–110, 112–116, 118–119, 121–124, 132–135, 137–144, 146–147, 149–151, 153–162, 164, 166–174, 176
dataset_list.py	0	6	84%	41, 47–48, 50–52
model.py	0	8	0%	7, 10–14, 16–17
services/file_manager
__init__.py	0	0	100%
file_lineage.py	0	7	41%	15–16, 25, 28–30, 32
file_list.py	0	49	26%	27–31, 33–36, 39, 47–62, 65–67, 70–77, 79–90
file_manifests.py	0	95	25%	21–26, 41–45, 49–50, 53–61, 63, 67–70, 73–77, 79, 83–84, 87–89, 93–94, 97–104, 106, 109–117, 122–128, 133–138, 141–147, 149–151, 154–160, 162–164, 166–169
file_tag.py	0	39	31%	25, 29–33, 35, 38–50, 52–54, 56–57, 61–63, 66–70, 72–75, 77–78
services/file_manager/file_download
__init__.py	0	0	100%
download_client.py	0	189	17%	31–43, 46–55, 58–59, 61–62, 65, 67–68, 72–75, 82, 87–90, 92–100, 102, 104, 108–113, 115, 118–119, 122–128, 130–131, 133–135, 138–147, 150–155, 159–168, 176–178, 180–187, 189–193, 198–208, 210–211, 214–215, 220–221, 225–230, 234–235, 238–240, 242–253, 257–260, 263–267, 269–271, 273–275, 277–278, 280, 284–286, 288–301, 303
model.py	0	1	87%	17
services/file_manager/file_upload
__init__.py	0	0	100%
exception.py	0	1	75%	12
file_upload.py	0	59	59%	32–39, 73, 96, 124–125, 129, 131, 133–135, 137, 139, 151–157, 159–164, 166, 168–173, 177, 179–180, 182–183, 185–193, 195–196, 198, 250–251, 255
models.py	0	5	91%	23, 41, 140–142
upload_client.py	0	87	54%	99–102, 164–166, 179, 181–186, 188–192, 195, 197–209, 211, 254, 257, 261–266, 270–275, 277, 281, 283, 285, 287, 305, 330–331, 336, 340–343, 347, 363–365, 367–369, 378, 383–384, 386, 388–389, 391–394, 396, 410–416, 426
upload_validator.py	0	26	50%	29–31, 34–36, 40–44, 47–56, 59–60, 65, 67, 69
services/logger_services
__init__.py	0	0	100%
log_functions.py	0	0	100%
services/output_manager
__init__.py	0	0	100%
error_handler.py	0	8	91%	88–90, 102–104, 109, 118
help_page.py	0	10	85%	29–30, 38–39, 48–49, 61–62, 102–103
message_handler.py	0	65	58%	19–24, 29, 34, 39, 49, 54–56, 61, 66, 71, 76, 89, 94, 101, 106, 111, 115, 131, 146, 156, 166, 185, 189, 193, 207–218, 229–234, 236–242, 253, 257–258, 262–263, 265–266, 270, 274, 278
services/project_manager
__init__.py	0	0	100%
project.py	0	6	83%	40, 46–47, 49–51
services/user_authentication
__init__.py	0	0	100%
decorator.py	0	13	67%	31, 34, 51–55, 57, 61–64, 66
token_manager.py	0	21	57%	27, 30–32, 35, 38–39, 42–43, 63, 67, 71–72, 78–79, 81–84, 86–87
user_login_logout.py	0	43	64%	40–43, 113, 117–123, 125–127, 131–132, 136–143, 145–147, 151–152, 159–164, 166–168, 172–175
user_set_config.py	0	9	47%	17–20, 24–26, 28–29
utils
__init__.py	0	0	100%
aggregated.py	0	47	49%	24, 47, 63–74, 76–78, 84–85, 87, 91–94, 96–97, 111–118, 120–121, 125–132, 134–136
TOTAL	2788	1543	44%