Reproducibility Study

Scripts for manuscript Pulmonary Ventilation Analysis Using UTE Lung MRI: A Reproducibility Study

Usage

phase resolved recon
- main function: pr_recon_bash.sh, pr_recon.m
antspynet segmentation
- main function: AntsSegmentation-Cyclic.py
constrained registration
- elastix.py: Elastix 3d+t registration
- ants_syn.py: ANTs SyN registration
stats analysis
- split_violin.py: split violin plot of ventilation
- bland_altman.py: Bland-Altman plot of total ventilation
- bland_altman_6zone.py: Bland-Altman plot of total ventilation in 6 zones
- ants_intra_subject.py: register between two scans
- coefficient_of_variation.py: coefficient of variation between two scans

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
antspynet_segmentation		antspynet_segmentation
constrained_registration		constrained_registration
phase_resolved_recon		phase_resolved_recon
stats_analysis		stats_analysis
README.md		README.md