Analyze the package with RcppDeepState

[FabrizioSandri]

RcppDeepState Analysis

This pull request aims to find bugs in this R package using RcppDeepState-action

[github-actions]

RcppDeepState Report

function name	message	file line	address trace	R code
all_quartets	8 bytes in 1 blocks are definitely lost in loss record 7 of 1,293	AllQuartets.cpp:33	No Address Trace found	Test code testlist <- list(nTips = c(-1034462886L, 130012951L, -1915885210L, -1538685084L, -1705104631L, -1023490640L, -1272709731L, -1200673158L, -964176434L, 1185736148L, 2060335646L, 398558129L, 548322018L, -1400925600L, -1567621542L, -13838907L, -1280666631L, 1450757584L, 1174925149L, -915271959L, 550030284L, 1214066154L, -332708373L, 1461367050L, -1002175718L, -1110316285L, -656776799L, 1282378348L, 945109120L, -1301976417L, -1867543833L, -918818419L, -2131384259L, -963428194L, 1839284409L, 298460489L, 543017426L, -1020038829L, -470008916L, 925645495L, 568521959L, 1966442210L, -691627033L)) result <- do.call(Quartet:::all_quartets, testlist)
tqdist_OneToManyQuartetAgreementChar	62 bytes in 1 blocks are possibly lost in loss record 24 of 1,307	NewickParser.cpp:77	No Address Trace found	Test code testlist <- list(tree = c(NA, "uxrvwcycbzpjndhsrhbx", NA, "bxancqcmncsbqunzxvdy", "xznvtbir", NA, "", "whuzntssyhhjwh", "qrykbefxwnqcmfulbmzq", "lbnu", "gwsmtlogwrf", "", "qxpibgflblxeppmqiqum", "kljvsbzllaywqlwquets", "evkiazrttskmbfrqomis", NA, "osiwjhxdvlbuvgpdv", "rihbxigzoxjodgkznddm", NA, "cdtcwzfhoqvvmwdktsjv", "seyfnbdbbqsdsyqmugjk", NA, "isgbkhaerzraurxzztfn", "zanoxtjidozbchwqhvaz", "bugwxhnhowjqanwvwqvo", NA, NA, "oiedwjpdskyhyspbymdu", NA, "llwsiiacud", "hxehpf", NA, NA, "efjgmdrwlvpztsmxht", "mpjyuzstmucaaithqjuv", "thqujeonwbwnfyawlkma", NA, "ggmaszxzqshphbboctpv", "usdevabdwbic", "eaerhepugn", NA, "ibbkjoecdahbmxgckxj"), trees = c("tafittgehdoumeohnyhr", "knrcfmytenlyfsfgukzu", "whrxkhjabyplglpszqcv", NA, NA)) result <- do.call(Quartet:::tqdist_OneToManyQuartetAgreementChar, testlist)
tqdist_QuartetAgreementChar	62 bytes in 1 blocks are possibly lost in loss record 24 of 1,307	NewickParser.cpp:77	No Address Trace found	Test code testlist <- list(string1 = c(NA, "uxrvwcycbzpjndhsrhbx", NA, "bxancqcmncsbqunzxvdy", "xznvtbir", NA, "", "whuzntssyhhjwh", "qrykbefxwnqcmfulbmzq", "lbnu", "gwsmtlogwrf", "", "qxpibgflblxeppmqiqum", "kljvsbzllaywqlwquets", "evkiazrttskmbfrqomis", NA, "osiwjhxdvlbuvgpdv", "rihbxigzoxjodgkznddm", NA, "cdtcwzfhoqvvmwdktsjv", "seyfnbdbbqsdsyqmugjk", NA, "isgbkhaerzraurxzztfn", "zanoxtjidozbchwqhvaz", "bugwxhnhowjqanwvwqvo", NA, NA, "oiedwjpdskyhyspbymdu", NA, "llwsiiacud", "hxehpf", NA, NA, "efjgmdrwlvpztsmxht", "mpjyuzstmucaaithqjuv", "thqujeonwbwnfyawlkma", NA, "ggmaszxzqshphbboctpv", "usdevabdwbic", "eaerhepugn", NA, "ibbkjoecdahbmxgckxj"), string2 = c("tafittgehdoumeohnyhr", "knrcfmytenlyfsfgukzu", "whrxkhjabyplglpszqcv", NA, NA)) result <- do.call(Quartet:::tqdist_QuartetAgreementChar, testlist)

Analyzed functions summary

function name	tested inputs	inputs with issues
all_quartets	3	3
tqdist_AllPairsQuartetAgreement	3	0
tqdist_AllPairsQuartetAgreementChar	3	0
tqdist_AllPairsQuartetDistance	3	0
tqdist_AllPairsQuartetDistanceChar	3	0
tqdist_AllPairsTripletDistance	3	0
tqdist_OneToManyQuartetAgreement	3	0
tqdist_OneToManyQuartetAgreementChar	3	2
tqdist_PairsQuartetDistance	3	0
tqdist_PairsTripletDistance	3	0
tqdist_QuartetAgreement	3	0
tqdist_QuartetAgreementChar	3	2
tqdist_QuartetDistance	3	0
tqdist_TripletDistance	3	0
which_index	3	0

Report details

• Report generated by: 20f0c8c
• Inputs generator seed: 1661799024