USAlign, Rosetta, Amber and other apps script analysis
USAlign: running script and analysis of the results
Rosetta: Running basic scripts for minimisation, interface analysis and decompositions, as well as their analysis
Amber: Analysis and plotting the results from calculated trajectories from conventional MD. See https://github.com/Rmadeye/md_run_preparation
AF2: Generation of AlphaFold2 structures and json analysis
Do not forget to use proper citations for software authors!
- Clone repository
git clone https://github.com/Rmadeye/protein_analysis_tools
- Install all dependencies
pip install -r requirements.txt
Thank you!