Search results

Unintended Node Truncation in Contact Maps / Regulatory Graphs

Status: Open.

#276 In RuleWorld/bionetgen;

· akutuva21 opened on May 11, 2025

Time-dependent rate laws?

Status: Open.

#275 In RuleWorld/bionetgen;

· hodgensc opened on May 17, 2024

TotalRate keyword is ignored in generating .net, SBML, and other outputs

Status: Open.

#270 In RuleWorld/bionetgen;

· jrfaeder opened on Dec 21, 2023

SSA performance bug regarding order of reactions

Status: Open.

#265 In RuleWorld/bionetgen;

· leon9812 opened on Jun 28, 2023

Bundled CVODE contains CMake script with C99 compatibility issue

Status: Open.

#262 In RuleWorld/bionetgen;

· fweimer-rh opened on Dec 11, 2022

Disallow multiple bonds per component

Status: Open.

#260 In RuleWorld/bionetgen;

· ASinanSaglam opened on Aug 5, 2022

visualize regulatory graphs should automatically combine forward and reverse rule nodes

enhancement

Status: Open.

#259 In RuleWorld/bionetgen;

· jrfaeder opened on Jul 15, 2022

Missing compartment topology connections in VCell bngl output

Status: Open.

#246 In RuleWorld/bionetgen;

· jrfaeder opened on Apr 14, 2022

BioNetGen 2.8.0 appears to change the case requirements for states

Status: Open.

#245 In RuleWorld/bionetgen;

· jonrkarr opened on Feb 27, 2022

BUG: Using "<" in PatternQuantifier results in invalid XML

Status: Open.

#234 In RuleWorld/bionetgen;

· cjarmstrong97 opened on Sep 21, 2021

Handling of reversible reaction across compartments

enhancement

Priority-Medium

Status: Open.

#232 In RuleWorld/bionetgen;

· dweindl opened on Jul 22, 2021

Automate releasing to BioSimulators

enhancement

Priority-High

Status: Open.

#230 In RuleWorld/bionetgen;

· jonrkarr opened on Jun 8, 2021