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9 changes: 5 additions & 4 deletions README.md
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Original file line number Diff line number Diff line change
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# Stereo Data Analysis Solution (SDAS)
<img width="1226" height="897" alt="image" src="https://github.com/user-attachments/assets/7692b91b-5a34-4132-a2c5-293ef9d700a1" /># Stereo Data Analysis Solution (SDAS)


## Introduction
Expand All @@ -9,7 +9,7 @@ Stereo Data Analysis Solution (SDAS) is an advanced bioinformatics software suit
- Includes: data processing, cell type annotation, spatial domain identification, cellular neighborhood analysis, CNV analysis, spatial gene co-expression, differential gene identification, gene set enrichment analysis, protein interaction network analysis, cell communication analysis, trajectory analysis, transcription factor analysis, cell-type spatial relationship analysis, and public bulk database validation.
- **Input:** h5ad files (from SAW count, SAW convert gef2h5ad), h5mu files (from SAW aggr), rds files
- **Output:** h5ad, rds, csv, txt, png, pdf
![SDAS Introduction](https://www.gitbook.com/cdn-cgi/image/dpr=2,width=2400,onerror=redirect,format=auto/https%3A%2F%2Ffiles.gitbook.com%2Fv0%2Fb%2Fgitbook-x-prod.appspot.com%2Fo%2Fspaces%252FCggbEDCoTSjskIWVTMeM%252Fuploads%252Fn6rrmVLDNOhW96rd40hg%252Fsdas_intro_eng.png%3Falt%3Dmedia%26token%3D3820acc1-6278-4ada-89a8-4630c4e60bf4)
![SDAS Introduction](https://www.gitbook.com/cdn-cgi/image/dpr=2,width=2400,onerror=redirect,format=auto/https%3A%2F%2Ffiles.gitbook.com%2Fv0%2Fb%2Fgitbook-x-prod.appspot.com%2Fo%2Fspaces%252FCggbEDCoTSjskIWVTMeM%252Fuploads%252FKpT9Rfg1jyZDV51IkXx9%252Fsdas_intro_eng.png%3Falt%3Dmedia%26token%3Db88b4029-8def-4f31-845a-73f9d6a2102a)


## Documentation
Expand All @@ -26,8 +26,8 @@ Stereo Data Analysis Solution (SDAS) is an advanced bioinformatics software suit
- 64-bit CentOS/RedHat 7.8 or Ubuntu 20.04

### 2. Software Download
- Baidu Netdisk: https://bgipan.genomics.cn/#/link/LRlWY2OYRtd5QYP5ql1k code:wfFT
- Github (Note: The repository does not include .tar.gz file or test data):
- BGI CloudDrive: https://bgipan.genomics.cn/#/link/6G3xKjaGthlJwBxO2VMA (Extraction code: au3G)
- Github (Note: Due to GitHub's file size limits, sdas-1.0.0.tar.gz and the h5ad test data are not included in the repository):
```bash
git clone https://github.com/STOmics/SDAS.git
```
Expand Down Expand Up @@ -110,3 +110,4 @@ For full pipeline automation and job scheduling, see the [Pipeline Example](http

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© 2025 STOmics Tech Co., Ltd. All rights reserved.